9SJ4 Summary
- Structure title
- Structure of a circMbl 48S translation initiation complex in the scanning state
- Authors
- Zuber, P.K., Li, X., Du, Y., Gordiyenko, Y., Haddad, T.F.M., Ramakrishnan, V.
- Release date
- 2026-11-04
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
- Chains
- 3 RNA chains from Homo sapiens, Saccharomyces cerevisiae, Drosophila melanogaster
- 51 other chains
- Nucleic acid compounds
- Other compounds
- 18S rRNA, tRNAi-Met, circMbl-FLAG
- Eukaryotic translation initiation factor 3 subunit K, Eukaryotic translation initiation factor 3 subunit F, Eukaryotic translation initiation factor 3 subunit L, Eukaryotic translation initiation factor 3 subunit M, Eukaryotic translation initiation factor 3 subunit G, Eukaryotic translation initiation factor 3 subunit H, 60S ribosomal protein L41, Eukaryotic translation initiation factor 3 subunit A, Eukaryotic translation initiation factor 3 subunit E, Eukaryotic translation initiation factor 2 subunit 1, Eukaryotic translation initiation factor 2 subunit 3, Eukaryotic translation initiation factor 3 subunit I, Eukaryotic translation initiation factor 1A, X-chromosomal, Eukaryotic translation initiation factor 1, Eukaryotic translation initiation factor 3 subunit B, Eukaryotic translation initiation factor 3 subunit C, 40S ribosomal protein S7, 40S ribosomal protein S27, 40S ribosomal protein S21, 40S ribosomal protein S2, 40S ribosomal protein S3a, 40S ribosomal protein SA, 40S ribosomal protein S26, 40S ribosomal protein S6, 40S ribosomal protein S14, Eukaryotic translation initiation factor 2 subunit 2, 40S ribosomal protein S13, 40S ribosomal protein S11, Small ribosomal subunit protein eS4, X isoform, 40S ribosomal protein S9, 40S ribosomal protein S23, 40S ribosomal protein S30, 40S ribosomal protein S15a, 40S ribosomal protein S8, 40S ribosomal protein S24, 40S ribosomal protein S5, 40S ribosomal protein S16, 40S ribosomal protein S3, 40S ribosomal protein S10, 40S ribosomal protein S15, Receptor of activated protein C kinase 1, 40S ribosomal protein S19, 40S ribosomal protein S25, 40S ribosomal protein S18, 40S ribosomal protein S29, Ubiquitin-ribosomal protein eS31 fusion protein, 40S ribosomal protein S12, 40S ribosomal protein S28, 40S ribosomal protein S17, 40S ribosomal protein S20, Eukaryotic translation initiation factor 3 subunit D
Pairwise Interactions
Interactions annotated by FR3D:- 603 base-pairs
- 1,727 base-stacking
- 173 base-phosphate
- 175 base-ribose
- 90 oxygen stacking
- 122 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9SJ4 contains:- 36 hairpin loops from 0 motif groups
- 92 internal loops from 0 motif groups
- 22 junction loops from 0 motif groups
3D Redundancy
9SJ4 has chains which belong to the following equivalence classes in the current representative set:- NR_all_81815.6 (1)
- NR_all_46995.77 (1)
- NR_all_76058.1 (1) rep
- NR_4.0_81815.6 (1)
- NR_4.0_46995.77 (1)
- NR_4.0_76058.1 (1) rep
- NR_3.5_81815.6 (1)
- NR_3.5_46995.77 (1)
- NR_3.5_76058.1 (1) rep
- NR_20.0_81815.6 (1)
- NR_20.0_46995.77 (1)
- NR_20.0_76058.1 (1) rep
Similar structures
9TV2 9TT7 8GLP 8QOI 9SPF 8YOO 9O3W 9O3V 9S3D 9C3H 9S3B 8G5Y 9S3C 9QLO 9I2D 6ZLW 9SPI 8T4S 8YOP 9QLQ 6ZXG 8G60 9O3Y 9RUC 8G5Z 9PBE 6ZMI 9FQZ 9BKD 8K2C 9P8B 6ZP4 9RPV 8PPL 6ZXH 9QLP 7XNY 7XNX 9P7E 6ZM7 8XSX 9P7D 9P7O 8XXL 9RPV 6ZVH 9P73 7MQA 8PJ5 7K5I 28ZX 9ED0 6ZOJ 9VXN 9RUA 6ZME 9RU9 9T6C 9P7Y 9RU8 6ZMO 22TU 8PJ6 9P72 9P7C 6ZV6 6Y2L 7WTX 9KRP 7WTZ 9P7K 28ZV 7QVP 8G61 9P7A 9P7X 9KN5 9P76 9P6Z 8XXM 9P7N 6ZMT 9I14 6ZON 6Z6M 7R4X 7WTU 9RU7 9KN6 9P9I 6ZN5 9KN0 7WTT 28ZY 6ZXE 9KZU 6ZXD 8PJ4 8Y0X 9KKF 8XP2 8OZ0 9SJ3 9KMW 8JDJ 6Y0G 9PKB 8G6J 9P78 9P7L 9P9H 9KMZ 9KMY 7A09 7WTW 6ZOK 7QVP 6ZUO 9G8O 6OM0 6OLE 9P7W 9PKD 6YBW 7WU0 8JDL 8XXN 8XSY 9PA7 8XP3 9KMT 8XSZ 9MNC 9KMV 8JDK 8PJ2 9T6D 9KMU 6ZXF 8Y0W 8JDM 9P8H 28ZU 6ZOL 8PJ1 9B0P 6XA1 6Y57 7TQL 9B0Q 7QP7 9KMX 9P79 8IFE 9P8C 9T6I 9BLN 9WW4 7WTS 9Y4G 9B0Q 6ZVJ 9SYR 8PJ3 9T69 9B0S 4UG0 9P7G 8IFD 6G5I 9P7F 9G8M 7WTV 30HI 9PKG 9Y49 9P7I 9I2E 9P7H 6G5H 9M0P 6G18 6IP5 5A2Q 9B0S 6OLI 7MQ8 6IP8 9P7J 9P8I 6G51 9KZX 5LKS 6G4S 6OLG 7MQ9 7QP6 28LN 5OA3 6OLF 29IZ 8RG0 6OLZ 6G53 6G4W 6OM7 9WW5 6IP6 9WW6 5VYC 5VYC 5VYC 5VYC 5VYC 6FEC 5VYC 4V6X 9WW7 5A8L 5T2C 6Z6L 6Z6N 6ZMW 5AJ0 9RG7 8PPK 6QZP 8ZDB 8ZDD 8ZDCStructures from NR_all_46995.77