9XJA Summary
- Structure title
- In situ portimine A-bound human pre-60S ribosome from intact HEK293T cells
- Authors
- Wang, Y., Zhang, Y., Gao, N.
- Release date
- 2026-11-11
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
- Chains
- 3 RNA chains from Homo sapiens
- 44 other chains
- Nucleic acid compounds
- Other compounds
- 28S rRNA, 5S rRNA, 5.8S rRNA
- Eukaryotic translation initiation factor 6, Large ribosomal subunit protein uL2, Large ribosomal subunit protein uL3, Large ribosomal subunit protein uL4, Large ribosomal subunit protein uL18, Large ribosomal subunit protein eL6, Large ribosomal subunit protein uL30, Large ribosomal subunit protein eL8, Large ribosomal subunit protein uL6, Large ribosomal subunit protein uL16, Large ribosomal subunit protein uL5, Large ribosomal subunit protein eL13, Large ribosomal subunit protein eL14, Large ribosomal subunit protein eL15, Large ribosomal subunit protein uL13, Large ribosomal subunit protein uL22, Large ribosomal subunit protein eL18, Large ribosomal subunit protein eL19, Large ribosomal subunit protein eL20, Large ribosomal subunit protein eL21, Large ribosomal subunit protein eL22, Large ribosomal subunit protein uL14, Large ribosomal subunit protein eL24, Large ribosomal subunit protein uL23, Large ribosomal subunit protein uL24, Large ribosomal subunit protein eL27, Large ribosomal subunit protein uL15, Large ribosomal subunit protein eL29, Large ribosomal subunit protein eL30, Large ribosomal subunit protein eL31, Large ribosomal subunit protein eL32, Large ribosomal subunit protein eL33, Large ribosomal subunit protein eL34, Large ribosomal subunit protein uL29, Large ribosomal subunit protein eL36, Large ribosomal subunit protein eL37, Large ribosomal subunit protein eL38, Large ribosomal subunit protein eL39, Ubiquitin-ribosomal protein eL40 fusion protein, Small ribosomal subunit protein eS32, Large ribosomal subunit protein eL42, Large ribosomal subunit protein eL43, Large ribosomal subunit protein eL28, Proliferation-associated protein 2G4
Pairwise Interactions
Interactions annotated by FR3D:- 1,505 base-pairs
- 3,938 base-stacking
- 330 base-phosphate
- 348 base-ribose
- 141 oxygen stacking
- 256 sugar-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 9XJA contains:- 76 hairpin loops from 0 motif groups
- 174 internal loops from 0 motif groups
- 47 junction loops from 0 motif groups
3D Redundancy
9XJA has chains which belong to the following equivalence classes in the current representative set:- NR_all_65061.68 (1)
- NR_all_52752.64 (1)
- NR_4.0_65061.68 (1)
- NR_4.0_52752.64 (1)
- NR_3.5_65061.68 (1)
- NR_3.5_52752.64 (1)
- NR_3.0_65061.68 (1)
- NR_3.0_52752.64 (1)
- NR_20.0_65061.68 (1)
- NR_20.0_52752.64 (1)
Similar structures
8GLP 9TV2 9XJH 9T3I 9TT7 9O3W 8QYX 8YOO 8QFD 9SPI 9C3H 8A3D 9SPF 9O3V 9S3D 9I2D 9S3B 9S3C 9QLO 9PBE 8G5Y 9RUC 9PKD 9QLQ 8YOP 9O3Y 9P7D 8QOI 9P8B 8G5Z 8JDK 9P7E 8G60 9RPV 9GUL 6ZMI 9FQZ 29IW 8XSX 9QLP 9T6D 8JDL 9P73 8JDJ 7F5S 8OJ5 8K2C 9P7O 9RPV 9RUA 29IX 9P7Y 7XNY 9P7C 8FLE 9PA7 6ZM7 9P9J 9MNC 9P7A 9VXN 9P7X 9T6C 9P9I 8JDM 7OW7 7XNX 6QZP 8IFD 8FLB 29IZ 8FLD 8FL7 9P72 9P7K 9P76 9P9H 8OHD 9P78 6Y2L 8G61 9P7N 8IFE 9RU9 6Y6X 9GMO 9P7W 6Z6M 6ZME 9P6Z 9I2E 7QVP 9RU8 8FL2 6ZMO 9P7L 8FLA 9RU7 22TU 8FL6 9KZU 8FL3 8Y0X 8Y0W 9B0P 6LQM 9GY4 8IDT 9WW4 9PKB 9P9K 8G6J 6Y0G 9P8H 8INF 8FLF 9N9J 7QVP 9I14 6OM0 8XSY 8OJ8 9G8M 8OJ0 6LSR 6OLE 28LN 6XA1 6LU8 8FKV 8FL9 8RL2 9P8C 9P79 8FKW 8XSZ 9KZX 9QIW 8IDY 7BHP 8FLC 9M0P 6Y57 8INE 9WW5 29IY 6LSS 8FKY 8FKX 30HI 9B0Q 9T6I 9PKG 8IPY 8INK 9T69 9B0S 9Y4G 9SYR 9XJ6 8FL4 9QER 9B0Q 4UG0 8IPD 9QET 9P7G 9P7F 8FKQ 8FKU 8FKS 8FKT 9WW6 6OLI 8FKR 9B0S 8IE3 9P7I 9Y49 8ONY 9P7H 8FKP 8IR1 8IR3 6IP5 9P8I 9P7J 5T2C 9WW7 6W6L 6OLG 8FKZ 6IP8 6OLF 5LKS 6OLZ 8FL0 7ZFW 6OM7 9GJ6 6IP6 4V6X 8IPX 5A8L 6SXO 9GJ5 6Z6N 6Z6L 5AJ0 9RG7Structures from NR_all_65061.68