IL_10838.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7	1-7	2-3	2-4	2-6	3-6	4-5
1	IL_5AJ0_076	5AJ0	0.3983	0		A2	LSU rRNA	G	1735	U	1736	C	1737	U	1738	*	A	1757	A	1758	C	1759	cWW				ncWWa	cWW
2	IL_4V91_062	4V91	0.3537	1	Major groove platform with extra cWW (H)	1	LSU rRNA	G	1262	G	1264	U	1265	G	1266	*	C	1275	U	1276	C	1277	cWW	cSH			ncWw	ncWW
3	IL_3J9W_108	3J9W	0.3601	1		BA	LSU rRNA	G	1133	G	1135	U	1136	G	1137	*	C	1146	U	1147	C	1148	cWW	cSH			cWw	cWW
4	IL_3J7P_074	3J7P	0.3151	1	Major groove platform with extra cWW (H)	5	LSU rRNA	G	2001	G	2003	U	2004	G	2005	*	C	2014	U	2015	C	2016	cWW	ncSH	cSH		cWw	cWW
5	IL_4V88_302	4V88	0.2807	1	Major groove platform with extra cWW (H)	A5	LSU rRNA	G	1262	G	1264	U	1265	G	1266	*	C	1275	U	1276	C	1277	cWW	cSH			cWw	cWW
6	IL_5D8H_003	5D8H	0.2758	1	Major groove platform with extra cWW	A	LSU rRNA	G	1197	G	1199	U	1200	G	1201	*	C	1210	U	1211	C	1212	cWW	cSH			cWw	cWW
7	IL_1MMS_004	1MMS	0.3100	1		D	LSU rRNA	G	1087	G	1089	U	1090	G	1091	*	C	1100	U	1101	C	1102	cWW	cSH			cWw	cWW
8	IL_5AN9_014	5AN9	0.3763	1	Major groove platform with extra cWW (H)	N	LSU rRNA	G	1497	G	1499	U	1500	G	1501	*	C	1510	U	1511	C	1512	cWW	cSH			cWw	cWW
9	IL_4V19_014	4V19	0.3057	0	Major groove platform with extra cWW (H)	A	LSU rRNA	C	284	A	285	U	286	C	287	*	G	302	U	303	G	304	cWW	cSH			cWw	cWW
10	IL_3J7Y_014	3J7Y	0.2401	0	Major groove platform with extra cWW (H)	A	LSU rRNA	C	1948	G	1949	U	1950	C	1951	*	G	1966	U	1967	G	1968	cWW	cSH			cWw	cWW
11	IL_4BTS_276	4BTS	0.2393	1		DA	SSU rRNA	U	256	G	257	U	259	C	260	*	G	199	U	200	A	201	cWW	ncSH			cWw	cWW
12	IL_3JAM_015	3JAM	0.2142	1	Major groove platform with extra cWW (H)	2	SSU rRNA	U	258	U	260	U	261	C	262	*	G	203	U	204	A	205	cWW	cSH			cWw	cWW
13	IL_4V88_397	4V88	0.2399	1	Major groove platform with extra cWW	A6	SSU rRNA	U	259	U	261	U	262	C	263	*	G	204	U	205	A	206	cWW	cSH			cWw	cWW
14	IL_5AJ0_064	5AJ0	0.1966	0	Major groove platform with extra cWW (H)	A2	LSU rRNA	G	1568	G	1569	U	1570	C	1571	*	G	1587	U	1588	C	1589	cWW	cSH			cWw	cWW
15	IL_3J7P_051	3J7P	0.2175	0	Major groove platform with extra cWW (H)	5	LSU rRNA	G	1586	G	1587	U	1588	C	1589	*	G	1605	U	1606	C	1607	cWW	cSH		ntSH	cWw	cWW
16	IL_4V88_274	4V88	0.1551	0	Major groove platform with extra cWW (H)	A5	LSU rRNA	G	869	G	870	U	871	U	872	*	A	888	U	889	C	890	cWW	cSH			cWw	cWW
17	IL_4V91_035	4V91	0.1414	0	Major groove platform with extra cWW (H)	1	LSU rRNA	G	869	G	870	U	871	U	872	*	A	888	U	889	C	890	cWW	cSH		ntSH	cWw	cWW
18	IL_4V8P_340	4V8P	0.1358	0	Major groove platform with extra cWW (H)	F1	LSU rRNA	G	894	A	895	U	896	A	897	*	U	913	U	914	C	915	cWW	cSH			cWw	cWW
19	IL_3J79_033	3J79	0.0000	0	Major groove platform with extra cWW (H)	A	LSU rRNA	G	988	A	989	U	990	A	991	*	U	1007	U	1008	C	1009	cWW	ncSH		tSH	cWw	cWW
20	IL_5FDU_022	5FDU	0.1342	0	Major groove platform with extra cWW (H)	1A	LSU rRNA	G	785	G	786	U	787	G	788	*	C	803	U	804	C	805	cWW	cSH		ntSH	cWw	cWW
21	IL_4IOA_018	4IOA	0.1538	0		X	LSU rRNA	G	751	G	752	U	753	G	754	*	C	769	U	770	C	771	cWW	cSH		ntSH	cWw	cWW
22	IL_4V9F_028	4V9F	0.1698	0	Major groove platform with extra cWW	0	LSU rRNA	G	830	U	831	U	832	G	833	*	C	849	U	850	C	851	cWW	cSH			cWw	cWW
23	IL_5FDU_096	5FDU	0.2612	1		1A	LSU rRNA	G	2501	G	2502	U	2504	U	2505	*	A	2471	U	2472	C	2473	cWW	ncSH			cWw	cWW
24	IL_4V19_047	4V19	0.2933	1	Major groove minor groove platform with extra cWW (H)	A	LSU rRNA	G	1310	G	1311	U	1313	U	1314	*	A	1280	U	1281	C	1282	cWW	cSH			cWw	cWW
25	IL_5AJ0_149	5AJ0	0.3694	1		A2	LSU rRNA	U	4397	U	4398	U	4400	U	4401	*	G	4367	U	4368	G	4369	cWW				cWw	cWW
26	IL_4V88_352	4V88	0.3902	1		A5	LSU rRNA	U	2858	U	2859	U	2861	U	2862	*	G	2828	U	2829	G	2830	cWW				cWw	cWW
27	IL_3J79_102	3J79	0.3404	1		A	LSU rRNA	U	3217	U	3218	U	3220	U	3221	*	G	3187	U	3188	G	3189	cWW				cWw	cWW
28	IL_4V8P_411	4V8P	0.3754	1		F1	LSU rRNA	U	2846	U	2847	U	2849	U	2850	*	G	2816	U	2817	G	2818	cWW				cWw	cWW
29	IL_4V91_114	4V91	0.3944	1		1	LSU rRNA	U	2858	U	2859	U	2861	U	2862	*	G	2828	U	2829	G	2830	ncWW				cWw	cWW
30	IL_3J7P_121	3J7P	0.3938	1		5	LSU rRNA	U	4435	U	4436	U	4438	U	4439	*	G	4405	U	4406	G	4407	cWW				cWw	cWW
31	IL_4V9F_003	4V9F	0.3968	0	Major groove platform with extra cWW	0	LSU rRNA	C	440	A	441	A	442	C	443	*	G	39	C	40	G	41	cWW	cSH		cWWa	ncWW	cWW
32	IL_3PDR_009	3PDR	0.4397	0	Major groove platform with extra cWW (H)	A	M-box riboswitch (ykoK leader)	C	33	U	34	C	35	C	36	*	G	149	U	150	G	151	cWW	cSH		cwW		cWW
33	IL_3J9W_163	3J9W	0.4799	1	Major groove minor groove platform with extra cWW (H)	BA	LSU rRNA	G	2518	G	2519	U	2521	U	2522	*	A	2488	U	2489	C	2490	cWW	cSH				cWW
34	IL_3P49_006	3P49	0.6763	1		A	Glycine riboswitch	C	34	G	35	A	37	G	38	*	C	51	A	52	G	53	ncWW				ntHS	ncWW
35	IL_3P49_009	3P49	0.6933	1		A	Glycine riboswitch	C	109	G	110	A	112	G	113	*	C	142	A	143	G	144	ncWW				ntHS	cWW
36	IL_1XJR_001	1XJR	0.7080	1	Isolated basepair with bulged bases	A	s2m RNA	C	9	C	10	A	12	G	13	*	C	39	A	40	G	41	cWW					cWW
37	IL_3J9W_067	3J9W	0.7096	0		BA	LSU rRNA	C	480	U	481	C	482	C	483	*	G	43	A	44	G	45	cWW			ncWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAGUG*CUC	7
UUUUU*GUG	6
GGUUU*AUC	3
UUUUC*GUA	2
GGUC*GUC	2
GGUU*AUC	2
GAUA*UUC	2
GGUG*CUC	2
CGAAG*CAG	2
GUCU*AAC	1
CAUC*GUG	1
CGUC*GUG	1
UGAUC*GUA	1
GUUG*CUC	1
CAAC*GCG	1
CUCC*GUG	1
CCGAG*CAG	1
CUCC*GAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUU*U	8
AGU*U	7
GU*U	7
AU*U	3
GUU*U	3
UC*A	2
GAA*A	2
GAU*U	1
UU*U	1
AA*C	1
UC*U	1
CGA*A	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_10838.1 Version IL_10838.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_10838.1 Version IL_10838.1 of this group appears in releases 2.0 to 2.0

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Csv

Json