#Varna 2DMotifNum NtsInstances
1
  • HL_37824.1
HL_37824.1
  • Basepair signature: cWW-F-F-F-F
  • History status: New id, > 2 parents
  • GNRA (295)
  • GNRA with one bulged base (10)
  • GNRA variation (8)
  • GNRA related (7)
  • GNRA with GA tSW pair (4)
  • Other HL (1)
  • 6359
    2
    • HL_43993.1
    HL_43993.1
    • Basepair signature: cWW-tWH-F-F-F-F-F
    • History status: New id, > 2 parents
  • T-loop with 2 stacked bulged bases (137)
  • T-loop related (1)
  • 9141
    3
    • HL_34617.1
    HL_34617.1
    • Basepair signature: cWW-tSW-F
    • History status: New id, > 2 parents
  • UNCG (49)
  • UNCG variation (2)
  • 557
    4
    • HL_06059.1
    HL_06059.1
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: New id, > 2 parents
  • tRNA anticodon loop (33)
  • Anticodon loop related (6)
  • 951
    5
    • HL_43793.1
    HL_43793.1
    • Basepair signature: cWW-F
    • History status: New id, > 2 parents
  • Mini UNCG (33)
  • Mini UNCG with extended bulge (1)
  • 350
    6
    • HL_93324.1
    HL_93324.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: New id, > 2 parents
  • Pseudoknot geometry (24)
  • 826
    7
    • HL_71121.1
    HL_71121.1
    • Basepair signature: cWW-F
    • History status: New id, > 2 parents
    324
    8
    • HL_77436.1
    HL_77436.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, > 2 parents
  • Other HL (2)
  • tRNA anticodon loop (1)
  • T-loop with 1 bulged base (1)
  • 724
    9
    • HL_58705.1
    HL_58705.1
    • Basepair signature: cWW-tWH-F-F-F
    • History status: New id, > 2 parents
  • T-loop with 2 bulged bases not stacked (11)
  • T-loop with 2 stacked bulged bases (8)
  • T-loop with 1 bulged base (2)
  • 723
    10
    • HL_48417.1
    HL_48417.1
    • Basepair signature: cWW-F-F
    • History status: New id, > 2 parents
    423
    11
    • HL_33074.2
    HL_33074.2
    • Basepair signature: cWW-F-F-F-cWW-F-F-F
    • History status: Updated, 2 parents
    1022
    12
    • HL_22584.3
    HL_22584.3
    • Basepair signature: cWW-tWS-cWW-F
    • History status: Updated, 1 parent
    522
    13
    • HL_82182.1
    HL_82182.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: New id, > 2 parents
  • GNRA with near cWW (3)
  • 821
    14
    • HL_20811.1
    HL_20811.1
    • Basepair signature: cWW-cWS-F
    • History status: New id, > 2 parents
  • tRNA D-loop (12)
  • 518
    15
    • HL_64188.1
    HL_64188.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, > 2 parents
  • GNRA wlth tandem sheared (1)
  • 718
    16
    • HL_08002.12
    HL_08002.12
    • Basepair signature: cWW-cWW-F-tWH
    • History status: Updated, 2 parents
  • T-loop with unstacked turn (15)
  • T-loop with 2 stacked bulged bases (1)
  • 616
    17
    • HL_27115.1
    HL_27115.1
    • Basepair signature: cWW-tSH-F-F-F-F
    • History status: New id, > 2 parents
  • GNRA wlth tandem sheared (12)
  • Anticodon loop related (2)
  • GNRA related (1)
  • 816
    18
    • HL_56334.1
    HL_56334.1
    • Basepair signature: cWW-F
    • History status: New id, > 2 parents
  • Mini UNCG (8)
  • Mini UNCG related (1)
  • 316
    19
    • HL_30680.1
    HL_30680.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, > 2 parents
  • Pseudoknot geometry (13)
  • 715
    20
    • HL_36430.1
    HL_36430.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, > 2 parents
    615
    21
    • HL_75293.1
    HL_75293.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, > 2 parents
    1015
    22
    • HL_99538.1
    HL_99538.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: New id, > 2 parents
    814
    23
    • HL_40756.1
    HL_40756.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 2 parents
    514
    24
    • HL_56357.1
    HL_56357.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 2 parents
    513
    25
    • HL_49922.1
    HL_49922.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 2 parents
    512
    26
    • HL_79150.1
    HL_79150.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, > 2 parents
  • Pseudoknot geometry (1)
  • 712
    27
    • HL_22523.1
    HL_22523.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, > 2 parents
  • UNCG variation (1)
  • GNRA related (1)
  • 512
    28
    • HL_65794.1
    HL_65794.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 2 parents
  • Ribsomal LSU H95 (6)
  • Pseudoknot geometry (5)
  • 611
    29
    • HL_73266.7
    HL_73266.7
    • Basepair signature: cWW-cWW-cSW-cSH-F-F-F
    • History status: Updated, 2 parents
    911
    30
    • HL_66853.5
    HL_66853.5
    • Basepair signature: cWW-cWW-cHS-cWS
    • History status: Updated, 2 parents
    711
    31
    • HL_47383.2
    HL_47383.2
    • Basepair signature: cWW-F-F-cWW-F-F
    • History status: Updated, 2 parents
    811
    32
    • HL_04783.1
    HL_04783.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, > 2 parents
  • GNRA related (3)
  • 510
    33
    • HL_15076.1
    HL_15076.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, > 2 parents
  • Pseudoknot geometry (7)
  • 710
    34
    • HL_64690.4
    HL_64690.4
    • Basepair signature: cWW-cSW-F-F-F-cWW
    • History status: Updated, 2 parents
    89
    35
    • HL_78347.2
    HL_78347.2
    • Basepair signature: cWW-cWW-F-F
    • History status: Updated, 1 parent
    69
    36
    • HL_67216.9
    HL_67216.9
    • Basepair signature: cWW-cWW-F-tSH
    • History status: Updated, 2 parents
  • GNRA (1)
  • 79
    37
    • HL_86929.1
    HL_86929.1
    • Basepair signature: cWW-F
    • History status: New id, > 2 parents
    39
    38
    • HL_56817.1
    HL_56817.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 2 parents
    58
    39
    • HL_25222.2
    HL_25222.2
    • Basepair signature: cWW-cWW-F-F-cWW-F-F-F-F-F-F
    • History status: Updated, 2 parents
    138
    40
    • HL_36684.3
    HL_36684.3
    • Basepair signature: cWW-F-F-F-F-cWW-F-F-F
    • History status: Updated, 2 parents
    118
    41
    • HL_83767.2
    HL_83767.2
    • Basepair signature: cWW-F-F
    • History status: Exact match
    68
    42
    • HL_19870.9
    HL_19870.9
    • Basepair signature: cWW-tHH-cWW-tHS-F-F-tWW
    • History status: Updated, 2 parents
    118
    43
    • HL_67407.1
    HL_67407.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, 2 parents
    108
    44
    • HL_23696.1
    HL_23696.1
    • Basepair signature: cWW-F-F
    • History status: New id, > 2 parents
  • UNCG variation (1)
  • 48
    45
    • HL_52953.1
    HL_52953.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, > 2 parents
    68
    46
    • HL_04171.6
    HL_04171.6
    • Basepair signature: cWW-cWW-F-F-F-F-F-F
    • History status: Exact match
    108
    47
    • HL_82661.1
    HL_82661.1
    • Basepair signature: cWW-tSH-F-F-F-F-F
    • History status: New id, 1 parent
    97
    48
    • HL_93616.1
    HL_93616.1
    • Basepair signature: cWW-cWS-F-F-F-F
    • History status: New id, 1 parent
  • tRNA D-loop (7)
  • 87
    49
    • HL_39334.8
    HL_39334.8
    • Basepair signature: cWW-cWS-tSW-F-F
    • History status: Exact match
    77
    50
    • HL_56677.9
    HL_56677.9
    • Basepair signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW
    • History status: Updated, 1 parent
    137
    51
    • HL_40252.2
    HL_40252.2
    • Basepair signature: cWW-cWS-tHS-F
    • History status: Updated, 2 parents
    77
    52
    • HL_44398.1
    HL_44398.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: New id, 1 parent
    87
    53
    • HL_32617.8
    HL_32617.8
    • Basepair signature: cWW-F-F-F
    • History status: Updated, 2 parents
  • tRNA D-loop (5)
  • D-loop related (1)
  • 57
    54
    • HL_90642.8
    HL_90642.8
    • Basepair signature: cWW-tWH-F-F-F
    • History status: Updated, 1 parent
    77
    55
    • HL_13963.1
    HL_13963.1
    • Basepair signature: cWW-F-F
    • History status: New id, > 2 parents
    47
    56
    • HL_87954.1
    HL_87954.1
    • Basepair signature: cWW-tSW-F
    • History status: New id, 2 parents
    57
    57
    • HL_20743.5
    HL_20743.5
    • Basepair signature: cWW-cWW-F-F-F-F
    • History status: Updated, 2 parents
    87
    58
    • HL_35677.1
    HL_35677.1
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: New id, > 2 parents
  • Pseudoknot with intercalation (3)
  • 97
    59
    • HL_23827.2
    HL_23827.2
    • Basepair signature: cWW-cWW-F-F-F-F-F
    • History status: Updated, 2 parents
    87
    60
    • HL_43613.6
    HL_43613.6
    • Basepair signature: cWW-tWH-tWH-F
    • History status: Exact match
    76
    61
    • HL_24596.1
    HL_24596.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, > 2 parents
    56
    62
    • HL_83003.1
    HL_83003.1
    • Basepair signature: cWW-cWW-F-F-F
    • History status: New id, > 2 parents
    76
    63
    • HL_19210.1
    HL_19210.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, 2 parents
    106
    64
    • HL_83632.1
    HL_83632.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: New id, > 2 parents
  • tRNA anticodon loop (4)
  • 86
    65
    • HL_55195.2
    HL_55195.2
    • Basepair signature: cWW-F
    • History status: Updated, 2 parents
    36
    66
    • HL_61933.1
    HL_61933.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, 1 parent
  • Pseudoknot with intercalation (6)
  • 106
    67
    • HL_14199.2
    HL_14199.2
    • Basepair signature: cWW-tHS-cWW-F-F-F
    • History status: Updated, 1 parent
    96
    68
    • HL_84570.1
    HL_84570.1
    • Basepair signature: cWW-cWW-F
    • History status: New id, > 2 parents
  • Other HL (1)
  • 56
    69
    • HL_97756.1
    HL_97756.1
    • Basepair signature: cWW-cSH-cWS-tSW-cSW-cWW-F-F-F-F
    • History status: Exact match
    146
    70
    • HL_56131.1
    HL_56131.1
    • Basepair signature: cWW-F-F
    • History status: New id, > 2 parents
    46
    71
    • HL_72777.1
    HL_72777.1
    • Basepair signature: cWW-F-cWH-F-F-F-F
    • History status: Exact match
    96
    72
    • HL_89881.2
    HL_89881.2
    • Basepair signature: cWW-tHW-F-F-F-F-F-F
    • History status: Exact match
    105
    73
    • HL_54152.1
    HL_54152.1
    • Basepair signature: cWW-F-F
    • History status: New id, > 2 parents
    45
    74
    • HL_45175.1
    HL_45175.1
    • Basepair signature: cWW-cWS-F-F
    • History status: New id, > 2 parents
  • tRNA D-loop (4)
  • 65
    75
    • HL_86769.4
    HL_86769.4
    • Basepair signature: cWW-cWW-cSH-F
    • History status: Updated, 2 parents
    75
    76
    • HL_41019.1
    HL_41019.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, > 2 parents
  • Anticodon loop related (1)
  • 105
    77
    • HL_99769.1
    HL_99769.1
    • Basepair signature: cWW-cWW-F-F-F-F
    • History status: New id, > 2 parents
    85
    78
    • HL_50779.1
    HL_50779.1
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
    95
    79
    • HL_06226.1
    HL_06226.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, 2 parents
    105
    80
    • HL_20554.1
    HL_20554.1
    • Basepair signature: cWW-tWH-F-F
    • History status: New id, 2 parents
    65
    81
    • HL_38649.1
    HL_38649.1
    • Basepair signature: cWW-tSH-F-F-F-F-F-F
    • History status: New id, > 2 parents
    105
    82
    • HL_59342.2
    HL_59342.2
    • Basepair signature: cWW-F-F-F-F-cWW-F-F
    • History status: Updated, 2 parents
    105
    83
    • HL_09967.1
    HL_09967.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: New id, 2 parents
  • tRNA anticodon loop (2)
  • Anticodon loop related (2)
  • Pseudoknot geometry (1)
  • 85
    84
    • HL_01927.1
    HL_01927.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    74
    85
    • HL_89199.1
    HL_89199.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 1 parent
  • Mini UNCG (4)
  • 54
    86
    • HL_07951.1
    HL_07951.1
    • Basepair signature: cWW-F-F
    • History status: New id, > 2 parents
  • tRNA D-loop (1)
  • 44
    87
    • HL_82710.1
    HL_82710.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 2 parents
    54
    88
    • HL_49941.1
    HL_49941.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, > 2 parents
  • tRNA D-loop (1)
  • 74
    89
    • HL_53971.1
    HL_53971.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, 2 parents
    74
    90
    • HL_73450.1
    HL_73450.1
    • Basepair signature: cWW-F-F
    • History status: New id, 2 parents
    44
    91
    • HL_05475.1
    HL_05475.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: New id, 2 parents
  • Pseudoknot (2)
  • 84
    92
    • HL_96426.1
    HL_96426.1
    • Basepair signature: cWW-F
    • History status: New id, > 2 parents
  • Externally structured (2)
  • 34
    93
    • HL_50537.6
    HL_50537.6
    • Basepair signature: cWW-F-F-F
    • History status: Updated, 2 parents
  • D-loop related (1)
  • 54
    94
    • HL_86877.1
    HL_86877.1
    • Basepair signature: cWW-cSH-F-F-F-F-F-F
    • History status: Exact match
    94
    95
    • HL_02887.1
    HL_02887.1
    • Basepair signature: cWW-tWH-F-F-F-F-F-F
    • History status: New id, 2 parents
  • T-loop with 3 stacked bulged bases (3)
  • 104
    96
    • HL_26777.1
    HL_26777.1
    • Basepair signature: cWW-tWH-tWH-F-F
    • History status: New id, 1 parent
    84
    97
    • HL_80922.1
    HL_80922.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, > 2 parents
    54
    98
    • HL_81100.1
    HL_81100.1
    • Basepair signature: cWW
    • History status: New id, > 2 parents
    24
    99
    • HL_91015.1
    HL_91015.1
    • Basepair signature: cWW-cWH-F
    • History status: New id, 1 parent
    54
    100
    • HL_42046.1
    HL_42046.1
    • Basepair signature: cWW-tSS-F-F-F
    • History status: New id, 1 parent
    74
    101
    • HL_55436.1
    HL_55436.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, 2 parents
  • Pseudoknot geometry (1)
  • 104
    102
    • HL_84702.1
    HL_84702.1
    • Basepair signature: cWW-F-F-tHW-F-F-F-F
    • History status: Exact match
    104
    103
    • HL_09260.1
    HL_09260.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, > 2 parents
  • tRNA D-loop (2)
  • 64
    104
    • HL_98864.1
    HL_98864.1
    • Basepair signature: cWW-tWH-F-F-F-F-F-F
    • History status: New id, 1 parent
  • T-loop with unstacked turn (4)
  • 104
    105
    • HL_38808.1
    HL_38808.1
    • Basepair signature: cWW-cWW
    • History status: New id, 2 parents
    44
    106
    • HL_68767.1
    HL_68767.1
    • Basepair signature: cWW-cWS-tSH-cWS-F
    • History status: New id, 1 parent
  • tRNA D-loop (3)
  • 83
    107
    • HL_49821.1
    HL_49821.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, 2 parents
    73
    108
    • HL_53504.2
    HL_53504.2
    • Basepair signature: cWW-cWW-tSH-F-F-F-F-F
    • History status: Updated, 2 parents
    103
    109
    • HL_04642.1
    HL_04642.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, > 2 parents
  • tRNA D-loop (1)
  • 73
    110
    • HL_73247.1
    HL_73247.1
    • Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (3)
  • 153
    111
    • HL_02373.2
    HL_02373.2
    • Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
    • History status: Updated, 2 parents
    143
    112
    • HL_12758.2
    HL_12758.2
    • Basepair signature: cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH
    • History status: Exact match
  • G-quadruplex (3)
  • 223
    113
    • HL_31581.6
    HL_31581.6
    • Basepair signature: cWW-cHS-F-F-F-cWW-F-F-F
    • History status: Updated, 2 parents
    113
    114
    • HL_94376.1
    HL_94376.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: New id, 2 parents
  • Pseudoknot geometry (2)
  • 113
    115
    • HL_50142.3
    HL_50142.3
    • Basepair signature: cWW-cWW-F-F-F
    • History status: Updated, 1 parent
  • Other HL (1)
  • 63
    116
    • HL_86109.1
    HL_86109.1
    • Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F
    • History status: Exact match
    123
    117
    • HL_19598.1
    HL_19598.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 2 parents
    53
    118
    • HL_90774.1
    HL_90774.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 2 parents
    53
    119
    • HL_83808.2
    HL_83808.2
    • Basepair signature: cWW-tWW-cWW-F-F
    • History status: Updated, 1 parent
  • Pseudoknot (3)
  • 73
    120
    • HL_96927.1
    HL_96927.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, > 2 parents
    63
    121
    • HL_75033.1
    HL_75033.1
    • Basepair signature: cWW-cWW-F-F-F
    • History status: New id, 2 parents
    73
    122
    • HL_03273.1
    HL_03273.1
    • Basepair signature: cWW-F-F-tWH-F-F-F
    • History status: New id, 2 parents
    93
    123
    • HL_67667.2
    HL_67667.2
    • Basepair signature: cWW-F-F
    • History status: Exact match
    43
    124
    • HL_81205.2
    HL_81205.2
    • Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F
    • History status: Exact match
    143
    125
    • HL_91503.6
    HL_91503.6
    • Basepair signature: cWW-cWW-F-F-F-F-F-F
    • History status: Updated, 1 parent
    93
    126
    • HL_34636.1
    HL_34636.1
    • Basepair signature: cWW-cWW-F-F-F-F-F
    • History status: New id, 2 parents
    93
    127
    • HL_07372.1
    HL_07372.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, > 2 parents
    103
    128
    • HL_09452.1
    HL_09452.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, > 2 parents
    53
    129
    • HL_88364.1
    HL_88364.1
    • Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
    • History status: New id, 2 parents
  • Pseudoknot geometry (1)
  • 153
    130
    • HL_29129.1
    HL_29129.1
    • Basepair signature: cWW-tWH-F-F-F-F
    • History status: New id, 2 parents
    83
    131
    • HL_68572.1
    HL_68572.1
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: New id, 2 parents
    93
    132
    • HL_07480.1
    HL_07480.1
    • Basepair signature: cWW-tSH-F-F-F
    • History status: New id, 1 parent
    73
    133
    • HL_20751.2
    HL_20751.2
    • Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    133
    134
    • HL_15574.1
    HL_15574.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, 2 parents
    72
    135
    • HL_29735.1
    HL_29735.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 2 parents
    62
    136
    • HL_73183.1
    HL_73183.1
    • Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry with G-bulge (2)
  • 142
    137
    • HL_98870.1
    HL_98870.1
    • Basepair signature: cWW-tSH-tWW-F-F-F-F-F
    • History status: Exact match
    112
    138
    • HL_10456.1
    HL_10456.1
    • Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F
    • History status: Exact match
    172
    139
    • HL_39243.1
    HL_39243.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 2 parents
    62
    140
    • HL_16398.1
    HL_16398.1
    • Basepair signature: cWW-F-F-F-F-tSW-F
    • History status: New id, 2 parents
    92
    141
    • HL_36335.1
    HL_36335.1
    • Basepair signature: cWW-F-F-cSS-cSS-F
    • History status: New id, 1 parent
    92
    142
    • HL_59735.3
    HL_59735.3
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Updated, 1 parent
    72
    143
    • HL_10540.1
    HL_10540.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, 2 parents
    72
    144
    • HL_65110.1
    HL_65110.1
    • Basepair signature: cWW-tSH-F-F
    • History status: New id, 2 parents
    62
    145
    • HL_78940.1
    HL_78940.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: New id, 2 parents
    112
    146
    • HL_89457.1
    HL_89457.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 2 parents
    52
    147
    • HL_04725.1
    HL_04725.1
    • Basepair signature: cWW-cWS-cWW-cWW-cWS
    • History status: Exact match
    82
    148
    • HL_21372.1
    HL_21372.1
    • Basepair signature: cWW-F-cSH-F-F
    • History status: Exact match
    52
    149
    • HL_60293.1
    HL_60293.1
    • Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F
    • History status: Exact match
  • G-quadruplex (2)
  • 182
    150
    • HL_73255.1
    HL_73255.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    82
    151
    • HL_86012.1
    HL_86012.1
    • Basepair signature: cWW-tWH-F-F-F-F
    • History status: New id, 1 parent
  • T-loop with unstacked turn (2)
  • 82
    152
    • HL_08128.1
    HL_08128.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 1 parent
  • Mini UNCG with extended bulge (2)
  • 62
    153
    • HL_36540.1
    HL_36540.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 1 parent
    62
    154
    • HL_02581.1
    HL_02581.1
    • Basepair signature: cWW-tSH-cWS-tSW-F-F-F
    • History status: New id, 1 parent
  • tRNA D-loop (2)
  • 112
    155
    • HL_90620.1
    HL_90620.1
    • Basepair signature: cWW-F-F-F-F-cSW-cSH-F
    • History status: Exact match
    112
    156
    • HL_05206.1
    HL_05206.1
    • Basepair signature: cWW-F-F
    • History status: New id, 2 parents
    42
    157
    • HL_96417.1
    HL_96417.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 2 parents
    52
    158
    • HL_08510.1
    HL_08510.1
    • Basepair signature: cWW-F-F-cSH-F-F
    • History status: Exact match
    82
    159
    • HL_21414.1
    HL_21414.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 1 parent
    52
    160
    • HL_13577.1
    HL_13577.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 2 parents
    62
    161
    • HL_26631.1
    HL_26631.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 1 parent
    52
    162
    • HL_45177.2
    HL_45177.2
    • Basepair signature: cWW-cWW-F-F
    • History status: Updated, 1 parent
    52
    163
    • HL_08513.1
    HL_08513.1
    • Basepair signature: cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    182
    164
    • HL_45785.1
    HL_45785.1
    • Basepair signature: cWW-F-F-F-F-cSH-F-F
    • History status: Exact match
    102
    165
    • HL_57863.1
    HL_57863.1
    • Basepair signature: cWW-F-F-cWH-cWH-F
    • History status: Exact match
  • G-quadruplex fragment (2)
  • 92
    166
    • HL_70802.1
    HL_70802.1
    • Basepair signature: cWW-cWS-F
    • History status: New id, 1 parent
  • D-loop related (1)
  • 52
    167
    • HL_08554.1
    HL_08554.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: New id, 2 parents
    172
    168
    • HL_74379.1
    HL_74379.1
    • Basepair signature: cWW-F-F-cSS-cSS-F-F-F
    • History status: New id, 1 parent
    112
    169
    • HL_41725.1
    HL_41725.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, 2 parents
    72
    170
    • HL_55305.1
    HL_55305.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    52
    171
    • HL_19906.1
    HL_19906.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 2 parents
    62
    172
    • HL_47732.1
    HL_47732.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: New id, 1 parent
    82
    173
    • HL_62934.1
    HL_62934.1
    • Basepair signature: cWW-tSH-F
    • History status: New id, 2 parents
    52
    174
    • HL_03333.1
    HL_03333.1
    • Basepair signature: cWW-F-F-F-cSH-F
    • History status: Exact match
    82
    175
    • HL_68499.1
    HL_68499.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, 2 parents
    102
    176
    • HL_81622.1
    HL_81622.1
    • Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
    • History status: Exact match
    142
    177
    • HL_72714.3
    HL_72714.3
    • Basepair signature: cWW-cWW-cWH-F-F-F-F-F
    • History status: Exact match
    112
    178
    • HL_01226.2
    HL_01226.2
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    72
    179
    • HL_23713.1
    HL_23713.1
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: New id, 1 parent
    92
    180
    • HL_38701.1
    HL_38701.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, 1 parent
    102
    181
    • HL_76390.1
    HL_76390.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 2 parents
  • Mini UNCG related (1)
  • 52
    182
    • HL_43517.1
    HL_43517.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 2 parents
  • Mini UNCG (1)
  • 52
    183
    • HL_81954.1
    HL_81954.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 2 parents
    62
    184
    • HL_53099.1
    HL_53099.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, 2 parents
    102
    185
    • HL_04641.1
    HL_04641.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    71
    186
    • HL_07903.1
    HL_07903.1
    • Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F
    • History status: New id, 1 parent
    131
    187
    • HL_20781.1
    HL_20781.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, 1 parent
    101
    188
    • HL_35941.1
    HL_35941.1
    • Basepair signature: cWW-F
    • History status: New id, 1 parent
    31
    189
    • HL_59564.1
    HL_59564.1
    • Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    201
    190
    • HL_85844.1
    HL_85844.1
    • Basepair signature: cWW-cWW-tWH-F-F-F-F-F
    • History status: New id, 1 parent
    111
    191
    • HL_24079.1
    HL_24079.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 1 parent
    61
    192
    • HL_56500.1
    HL_56500.1
    • Basepair signature: cWW-cWW-F-cSH-F-F
    • History status: Exact match
    91
    193
    • HL_70103.1
    HL_70103.1
    • Basepair signature: cWW-F-F
    • History status: New id, 1 parent
    41
    194
    • HL_85993.1
    HL_85993.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    71
    195
    • HL_98928.1
    HL_98928.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 1 parent
    61
    196
    • HL_53886.1
    HL_53886.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 1 parent
    51
    197
    • HL_16991.1
    HL_16991.1
    • Basepair signature: cWW-cWH-cWH-F-cWH-F
    • History status: Exact match
  • G-quadruplex fragment (1)
  • 81
    198
    • HL_30839.1
    HL_30839.1
    • Basepair signature: F-F-F
    • History status: New id, 1 parent
    31
    199
    • HL_70228.1
    HL_70228.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    51
    200
    • HL_93652.1
    HL_93652.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 1 parent
    61
    201
    • HL_99040.1
    HL_99040.1
    • Basepair signature: F-F-F-F-F-F
    • History status: New id, 1 parent
    61
    202
    • HL_02483.1
    HL_02483.1
    • Basepair signature: cWW-tWH-F-cSH-F-F-F
    • History status: Exact match
    101
    203
    • HL_24792.1
    HL_24792.1
    • Basepair signature: cWW-cWS-F-F-F
    • History status: New id, 1 parent
    61
    204
    • HL_18423.1
    HL_18423.1
    • Basepair signature: cWW-tSH-tHS-F
    • History status: New id, 1 parent
    71
    205
    • HL_70550.1
    HL_70550.1
    • Basepair signature: cWW-tSH-F-F-F-F
    • History status: New id, 1 parent
    81
    206
    • HL_21400.1
    HL_21400.1
    • Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH
    • History status: Exact match
  • G-quadruplex (1)
  • 181
    207
    • HL_60914.1
    HL_60914.1
    • Basepair signature: cWW-F
    • History status: Exact match
    31
    208
    • HL_12870.1
    HL_12870.1
    • Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    121
    209
    • HL_66482.1
    HL_66482.1
    • Basepair signature: cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F
    • History status: Exact match
    181
    210
    • HL_80362.1
    HL_80362.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 1 parent
    51
    211
    • HL_56845.1
    HL_56845.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    141
    212
    • HL_70751.1
    HL_70751.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: New id, 1 parent
    111
    213
    • HL_50318.1
    HL_50318.1
    • Basepair signature: cWW-cSH-F-F
    • History status: Exact match
    61
    214
    • HL_61202.1
    HL_61202.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 1 parent
  • GNRA related (1)
  • 51
    215
    • HL_99748.1
    HL_99748.1
    • Basepair signature: cWW-F-F-cSH
    • History status: New id, 1 parent
  • D-loop related (1)
  • 61
    216
    • HL_02811.1
    HL_02811.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    41
    217
    • HL_54801.1
    HL_54801.1
    • Basepair signature: cWW-cWW-F-F
    • History status: New id, 1 parent
    61
    218
    • HL_80411.1
    HL_80411.1
    • Basepair signature: cWW-F-cSH-F-F-F-F
    • History status: New id, 1 parent
    91
    219
    • HL_57022.1
    HL_57022.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: New id, 1 parent
  • Pseudoknot (1)
  • 81
    220
    • HL_70773.1
    HL_70773.1
    • Basepair signature: cWW-tSW-F-F
    • History status: New id, 1 parent
  • UNCG variation (1)
  • 61
    221
    • HL_22135.1
    HL_22135.1
    • Basepair signature: cWW-F-F
    • History status: New id, 1 parent
    41
    222
    • HL_36790.1
    HL_36790.1
    • Basepair signature: F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    181
    223
    • HL_61782.1
    HL_61782.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, 1 parent
  • tRNA D-loop (1)
  • 71
    224
    • HL_74292.1
    HL_74292.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, 1 parent
    101
    225
    • HL_41363.1
    HL_41363.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: New id, 1 parent
    101
    226
    • HL_33983.1
    HL_33983.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: New id, no parents
    71
    227
    • HL_02966.1
    HL_02966.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    371
    228
    • HL_26934.1
    HL_26934.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: New id, 1 parent
    81
    229
    • HL_58224.1
    HL_58224.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    71
    230
    • HL_97733.1
    HL_97733.1
    • Basepair signature: cWW-F-F-F-cSH-F
    • History status: Exact match
    81
    231
    • HL_08602.1
    HL_08602.1
    • Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F
    • History status: Exact match
    111
    232
    • HL_38046.1
    HL_38046.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: New id, 1 parent
    81
    233
    • HL_50851.1
    HL_50851.1
    • Basepair signature: cWW-cWH-cWH-cWH-cWH-F
    • History status: Exact match
  • G-quadruplex fragment (1)
  • 91
    234
    • HL_62041.1
    HL_62041.1
    • Basepair signature: cWW-cWS
    • History status: New id, 1 parent
  • D-loop related (1)
  • 41
    235
    • HL_87463.1
    HL_87463.1
    • Basepair signature: cWW-cWW-F-F-F-F-F
    • History status: New id, 1 parent
    91
    236
    • HL_14757.1
    HL_14757.1
    • Basepair signature: cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F
    • History status: New id, no parents
    171
    237
    • HL_06301.1
    HL_06301.1
    • Basepair signature: F-F-F-F-F-F-F
    • History status: New id, 1 parent
    71
    238
    • HL_58539.1
    HL_58539.1
    • Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F
    • History status: Exact match
    131
    239
    • HL_71925.1
    HL_71925.1
    • Basepair signature: F-F-F-F-F-F-F-F-F-F-F-F
    • History status: New id, 1 parent
    121
    240
    • HL_00317.1
    HL_00317.1
    • Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    191
    241
    • HL_52463.1
    HL_52463.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 1 parent
    51
    242
    • HL_28904.1
    HL_28904.1
    • Basepair signature: cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F
    • History status: New id, 1 parent
    161
    243
    • HL_42545.1
    HL_42545.1
    • Basepair signature: cWW-F-F-F-F-cSW-cSH-F
    • History status: New id, 1 parent
    71
    244
    • HL_91641.1
    HL_91641.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F
    • History status: New id, 1 parent
    161
    245
    • HL_35354.1
    HL_35354.1
    • Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH
    • History status: Exact match
    211
    246
    • HL_47854.1
    HL_47854.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 1 parent
    61
    247
    • HL_84847.1
    HL_84847.1
    • Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F
    • History status: Exact match
    141
    248
    • HL_98252.1
    HL_98252.1
    • Basepair signature: cWW-tWW-F-F-F-F
    • History status: Exact match
    81
    249
    • HL_63355.1
    HL_63355.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F
    • History status: New id, 1 parent
    131
    250
    • HL_15118.1
    HL_15118.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: New id, 1 parent
    111
    251
    • HL_92488.1
    HL_92488.1
    • Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F
    • History status: Exact match
    131
    252
    • HL_85434.1
    HL_85434.1
    • Basepair signature: cWW-cWW-F-F-F-F-F-F
    • History status: New id, 1 parent
    101
    253
    • HL_01763.1
    HL_01763.1
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: New id, 1 parent
    91
    254
    • HL_88558.1
    HL_88558.1
    • Basepair signature: cWW-tSH-F-F-F-F-F-F-F
    • History status: New id, 1 parent
    111

    Coloring options:


    Exact match 60; New id, 1 parent 65; Updated, 2 parents 21; New id, 2 parents 48; New id, > 2 parents 48; Updated, 1 parent 10; New id, no parents 2;

    Copyright 2025 BGSU RNA group. Page generated in 1.6708 s