Hairpin Loop Motif Atlas Release 4.7

#	Motif	Core Nts	Instances
1	HL_34789.5 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent GNRA (268) GNRA variation (13) GNRA with GA tSW pair (2) GNRA related (2)	6	428
2	HL_33597.4 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: Updated, 1 parent T-loop with 2 stacked bulged bases (135)	9	137
3	HL_61337.5 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 2 parents UNCG (45) UNCG variation (4)	5	72
4	HL_90436.4 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent Mini UNCG (34) Mini UNCG with extended bulge (2)	3	48
5	HL_81376.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match tRNA anticodon loop (32) Anticodon loop related (4)	9	43
6	HL_52651.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (19)	8	31
7	HL_64036.3 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 1 parent Fab BL3-6 binding hairpin with tSW (22) Other HL (3)	5	28
8	HL_91813.1 View exemplar Basepair signature: cWW-cSW-F History status: New id, > 2 parents UNCG variation (2)	5	24
9	HL_48677.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent LSU A loop (10) GNRA (1)	6	24
10	HL_13999.4 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Updated, 1 parent T-loop with 2 bulged bases not stacked (7) T-loop with 2 stacked bulged bases (6) T-loop with 1 bulged base (3) T-loop related (1)	7	24
11	HL_75660.9 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent	3	24
12	HL_89167.3 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent tRNA anticodon loop with synthetase (1) tRNA D-loop (1)	4	23
13	HL_36992.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match U1 small nuclear ribonucleoprotein A binding hairpin (20)	10	22
14	HL_63894.3 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Updated, 1 parent T-loop related (6) tRNA anticodon loop with synthetase (2) Other HL (1) T-loop (1)	7	22
15	HL_11974.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent LSU P loop (10) tRNA anticodon loop (4)	8	19
16	HL_09122.2 View exemplar Basepair signature: cWW-F-F-cSW-cSH-F History status: Exact match	9	18
17	HL_27670.5 View exemplar Basepair signature: cWW-tWH-F-F History status: Updated, 1 parent T-loop with unstacked turn (10)	6	17
18	HL_12626.2 View exemplar Basepair signature: cWW-F History status: Exact match Mini UNCG (13) Mini UNCG related (2)	3	17
19	HL_49081.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Pseudoknot geometry with 3' bulge (11)	5	17
20	HL_98423.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent GNRA with tandem sheared (9) GNRA with extra near cWW (2)	8	16
21	HL_77449.2 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Updated, 1 parent	8	16
22	HL_30680.5 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match Pseudoknot geometry (12)	7	16
23	HL_87268.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent GNRA with extra cWW (5) GNRA related (2) T-loop related (1) tRNA anticodon loop (1) GNRA with extra near cWW (1)	8	16
24	HL_76371.3 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Updated, 1 parent	7	15
25	HL_12125.3 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (4) Ribsomal LSU H95 (3)	6	15
26	HL_38491.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent	10	14
27	HL_67772.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent T-loop related (5) T-loop with 1 bulged base (2) Other HL (1)	7	14
28	HL_37889.2 View exemplar Basepair signature: cWW-cSW-F-F-F-F History status: Updated, 1 parent	8	13
29	HL_00911.3 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (4)	7	13
30	HL_02042.2 View exemplar Basepair signature: cWW-tSH-tHH-tWW-F-F-F History status: Updated, 1 parent	11	13
31	HL_28592.3 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	13
32	HL_20490.1 View exemplar Basepair signature: cWW-cWS-F History status: Exact match tRNA D-loop (12) Other HL (1)	5	13
33	HL_80709.5 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	12
34	HL_59381.3 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent	6	12
35	HL_46665.3 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent GNRA variation (5)	7	12
36	HL_50204.2 View exemplar Basepair signature: cWW-cWS-tSW-F-F History status: Updated, 1 parent	7	12
37	HL_53269.3 View exemplar Basepair signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW History status: Updated, 1 parent	13	11
38	HL_47171.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent	8	11
39	HL_32346.6 View exemplar Basepair signature: cWW-F History status: Exact match Mini UNCG (1)	3	11
40	HL_27530.2 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent	4	11
41	HL_23048.1 View exemplar Basepair signature: cWW-cWS-F-cSH History status: Exact match tRNA D-loop (3)	7	11
42	HL_35704.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	11
43	HL_59138.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	11
44	HL_36265.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	11
45	HL_46333.1 View exemplar Basepair signature: cWW-R-cSH History status: Exact match Purine riboswitch (8) Pseudoknot geometry (2)	7	11
46	HL_78372.2 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Updated, 1 parent	7	11
47	HL_87681.2 View exemplar Basepair signature: cWW-tWH-tWH-F History status: Updated, 1 parent	7	10
48	HL_46211.1 View exemplar Basepair signature: cWW-cWW-tSW-F History status: New id, 1 parent	7	10
49	HL_52011.2 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: Updated, 1 parent	9	10
50	HL_63054.2 View exemplar Basepair signature: cWW-cWS-F-F-F-F History status: Exact match tRNA D-loop (7)	8	10
51	HL_17803.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot with intercalation (3)	10	10
52	HL_37569.4 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 2 parents GNRA related (2)	5	10
53	HL_02452.2 View exemplar Basepair signature: cWW-F-cWH-F-F-F-F History status: Updated, 1 parent	9	9
54	HL_86621.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA anticodon loop (3) GNRA-like with tWH (2) Anticodon loop related (2)	7	9
55	HL_86834.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	9
56	HL_31089.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	9
57	HL_18470.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent tRNA D-loop (2)	8	8
58	HL_79773.1 View exemplar Basepair signature: cWW-tSW-F History status: New id, 2 parents	5	8
59	HL_97756.4 View exemplar Basepair signature: cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F History status: Updated, 1 parent	14	8
60	HL_78347.5 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	8
61	HL_87306.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Anticodon loop related (2) tRNA anticodon loop (1) Pseudoknot geometry (1) GNRA with extra near cWW (1)	8	7
62	HL_69752.4 View exemplar Basepair signature: cWW-F History status: Exact match UNCG related (1)	3	7
63	HL_35677.5 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match Pseudoknot with intercalation (3)	9	7
64	HL_97725.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match Pseudoknot geometry (2) tRNA anticodon loop (1)	6	7
65	HL_56131.3 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	7
66	HL_93535.3 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent GNRA (1)	6	7
67	HL_22758.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (1)	8	6
68	HL_97521.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent	9	6
69	HL_97696.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	6
70	HL_50951.2 View exemplar Basepair signature: cWW-F-F-tWH-F-F-F History status: Updated, 1 parent	9	6
71	HL_38635.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents GNRA related (2) tRNA anticodon loop (1)	7	6
72	HL_51853.2 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: Exact match	9	6
73	HL_33350.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	6
74	HL_73535.2 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F History status: Updated, 1 parent	11	6
75	HL_86432.2 View exemplar Basepair signature: cWW-tWH-tWH-F-F-F History status: Updated, 1 parent	9	6
76	HL_17440.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Pseudoknot (2)	8	6
77	HL_50006.5 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	6
78	HL_68749.2 View exemplar Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F History status: Updated, 1 parent	13	6
79	HL_18141.3 View exemplar Basepair signature: cWW-F-cSH History status: Exact match tRNA D-loop (4)	5	6
80	HL_14063.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	6
81	HL_99456.2 View exemplar Basepair signature: cWW-tSS-F-F-F History status: Updated, 2 parents	7	5
82	HL_32279.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	5
83	HL_44506.3 View exemplar Basepair signature: cWW-cWW-F History status: Updated, 1 parent	5	5
84	HL_55043.2 View exemplar Basepair signature: cWW-tSH-cWS-F History status: Exact match	7	5
85	HL_15296.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent	9	5
86	HL_76195.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	8	5
87	HL_45175.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match tRNA D-loop (5)	6	5
88	HL_92697.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	5
89	HL_89199.3 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG (3)	5	5
90	HL_20174.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	5
91	HL_82185.2 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F-F History status: Updated, 1 parent	10	5
92	HL_98864.4 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Exact match T-loop with unstacked turn (4)	10	5
93	HL_42293.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	5
94	HL_97067.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Exact match	7	4
95	HL_14856.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	4
96	HL_69186.3 View exemplar Basepair signature: cWW-cWW-F-F History status: Updated, 2 parents tRNA anticodon loop with synthetase (3)	6	4
97	HL_07480.3 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	7	4
98	HL_58375.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents UNCG (1) UNCG variation (1)	5	4
99	HL_01182.1 View exemplar Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F History status: Exact match	14	4
100	HL_55735.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	6	4
101	HL_12111.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG (1)	5	4
102	HL_77193.1 View exemplar Basepair signature: cWW-tWH-tWH-F-F History status: New id, 1 parent T-loop related (4)	8	4
103	HL_81314.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	4
104	HL_36488.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	4
105	HL_20751.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	13	4
106	HL_34245.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Exact match tRNA anticodon loop (1) Anticodon loop related (1)	9	4
107	HL_57684.1 View exemplar Basepair signature: cWW-F-F History status: Exact match tRNA D-loop (3)	4	4
108	HL_82710.3 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	4
109	HL_91503.8 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	3
110	HL_50525.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	3
111	HL_07380.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match GNRA (1)	6	3
112	HL_64374.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	3
113	HL_35113.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	3
114	HL_88364.4 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	15	3
115	HL_16651.2 View exemplar Basepair signature: cWW History status: Updated, 1 parent	2	3
116	HL_61768.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent	6	3
117	HL_76590.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	3
118	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	12	3
119	HL_08550.2 View exemplar Basepair signature: cWW-F-F-F-cSH History status: Exact match	7	3
120	HL_67667.4 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	3
121	HL_33487.2 View exemplar Basepair signature: cWW-cWW History status: Updated, 1 parent	4	3
122	HL_68571.1 View exemplar Basepair signature: cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	17	3
123	HL_02817.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	3
124	HL_40612.1 View exemplar Basepair signature: cWW History status: Exact match	2	3
125	HL_68572.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	3
126	HL_94376.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (2)	11	3
127	HL_25307.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: New id, 1 parent T-loop with 1 bulged base (1)	7	3
128	HL_04642.3 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (3)	7	3
129	HL_31962.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match	8	3
130	HL_68791.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	3
131	HL_37671.1 View exemplar Basepair signature: cWW-tWW-F-F-F History status: Exact match Pseudoknot (3)	7	3
132	HL_99373.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F-F-F-F History status: Exact match	11	3
133	HL_32152.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Anticodon loop related (1)	9	2
134	HL_79745.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
135	HL_34964.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	9	2
136	HL_57992.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	2
137	HL_69139.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	2
138	HL_00557.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	7	2
139	HL_60848.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F History status: Exact match	12	2
140	HL_10611.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
141	HL_47732.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	2
142	HL_84585.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	6	2
143	HL_00824.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Pseudoknot (1)	8	2
144	HL_27510.1 View exemplar Basepair signature: cWW-F History status: Exact match	4	2
145	HL_18565.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	8	2
146	HL_44740.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	7	2
147	HL_55305.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
148	HL_32704.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (2)	15	2
149	HL_48408.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	2
150	HL_70052.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	11	2
151	HL_86012.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match T-loop with unstacked turn (2)	8	2
152	HL_51121.1 View exemplar Basepair signature: cWW-F-F-F-F-cSH-F-F-F History status: Exact match	11	2
153	HL_88397.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (2)	7	2
154	HL_32871.1 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Exact match	9	2
155	HL_65821.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	2
156	HL_70658.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	12	2
157	HL_39243.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
158	HL_81312.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	2
159	HL_93383.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	9	2
160	HL_49073.1 View exemplar Basepair signature: cWW-cWS History status: Exact match UNCG related (1)	5	2
161	HL_71391.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
162	HL_29561.1 View exemplar Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F History status: Exact match	16	2
163	HL_56226.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	4	2
164	HL_24179.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: Exact match	7	2
165	HL_02621.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
166	HL_39665.1 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	14	2
167	HL_89498.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	14	2
168	HL_56676.1 View exemplar Basepair signature: cWW-F-F History status: Exact match UNCG variation (1)	6	2
169	HL_93658.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Exact match T-loop with 3 stacked bulged bases (1)	10	2
170	HL_12758.3 View exemplar Basepair signature: cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH History status: Exact match G-quadruplex (2)	22	2
171	HL_49556.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-F-F-F History status: Exact match tRNA D-loop (2)	11	2
172	HL_98821.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	11	2
173	HL_63151.1 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match	6	2
174	HL_78283.1 View exemplar Basepair signature: cWW-cWS-cWW-cWW-cWS History status: Exact match	8	2
175	HL_09841.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
176	HL_20535.3 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	6	2
177	HL_25137.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	2
178	HL_37101.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match tRNA D-loop (2)	7	2
179	HL_10322.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	2
180	HL_94488.1 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F History status: Exact match Pseudoknot geometry with G-bulge (1)	14	2
181	HL_60358.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	2
182	HL_74379.5 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Exact match	11	2
183	HL_99324.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	17	2
184	HL_53014.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	2
185	HL_91228.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Exact match	9	2
186	HL_10456.1 View exemplar Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F History status: Exact match	17	2
187	HL_57863.1 View exemplar Basepair signature: cWW-F-F-cWH-cWH-F History status: Exact match G-quadruplex fragment (2)	9	2
188	HL_26027.1 View exemplar Basepair signature: cWW-F History status: Exact match Mini UNCG related (1)	4	2
189	HL_60499.1 View exemplar Basepair signature: cWW-cWW-cWH-F-F-F-F-F History status: Exact match	11	2
190	HL_07074.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
191	HL_18423.1 View exemplar Basepair signature: cWW-tSH-tHS-F History status: Exact match	7	1
192	HL_42986.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	19	1
193	HL_10466.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
194	HL_21400.1 View exemplar Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH History status: Exact match G-quadruplex (1)	18	1
195	HL_84433.1 View exemplar Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F History status: Exact match	14	1
196	HL_26934.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
197	HL_76094.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match	5	1
198	HL_91641.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F History status: Exact match	16	1
199	HL_58224.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
200	HL_38046.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
201	HL_50851.1 View exemplar Basepair signature: cWW-cWH-cWH-cWH-cWH-F History status: Exact match G-quadruplex fragment (1)	9	1
202	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	1
203	HL_65266.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
204	HL_80008.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	1
205	HL_11542.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	1
206	HL_23010.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
207	HL_35354.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	21	1
208	HL_47854.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
209	HL_85461.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	15	1
210	HL_16270.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
211	HL_07903.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
212	HL_18978.1 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F History status: Exact match	9	1
213	HL_55605.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F History status: Exact match	12	1
214	HL_65313.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
215	HL_80411.1 View exemplar Basepair signature: cWW-F-cSH-F-F-F-F History status: Exact match tRNA D-loop (1)	9	1
216	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	13	1
217	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	13	1
218	HL_97714.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	1
219	HL_08179.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F History status: Exact match	11	1
220	HL_19136.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	7	1
221	HL_45232.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
222	HL_23509.1 View exemplar Basepair signature: cSH-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
223	HL_16725.1 View exemplar Basepair signature: cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH-F History status: Exact match	23	1
224	HL_61907.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
225	HL_76842.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (1)	7	1
226	HL_19930.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
227	HL_45584.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-tHH-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	50	1
228	HL_23600.1 View exemplar Basepair signature: cWW-F-cWH-F History status: Exact match	6	1
229	HL_59188.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	4	1
230	HL_86417.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
231	HL_16991.1 View exemplar Basepair signature: cWW-cWH-cWH-F-cWH-F History status: Exact match G-quadruplex fragment (1)	8	1
232	HL_39567.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
233	HL_51858.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	8	1
234	HL_62737.1 View exemplar Basepair signature: cWW-F-F-cSH History status: Exact match Other HL (1)	6	1
235	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	11	1
236	HL_59330.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
237	HL_29762.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
238	HL_24792.1 View exemplar Basepair signature: cWW-cWS-F-F-F History status: Exact match	6	1
239	HL_73580.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: Exact match	8	1
240	HL_17785.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
241	HL_52616.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	17	1
242	HL_33983.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
243	HL_46486.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
244	HL_56954.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
245	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	12	1
246	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	20	1
247	HL_74027.1 View exemplar Basepair signature: cWW History status: Exact match	17	1
248	HL_04641.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
249	HL_63355.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
250	HL_91218.1 View exemplar Basepair signature: cWW-cSH-F History status: Exact match	5	1
251	HL_87266.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	10	1
252	HL_42985.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
253	HL_20781.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
254	HL_46984.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	8	1
255	HL_84331.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
256	HL_94980.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
257	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	19	1
258	HL_50318.1 View exemplar Basepair signature: cWW-cSH-F-F History status: Exact match	6	1

Coloring options:
Nucleotide numbers

Exact match 190; Updated, 1 parent 52; New id, 1 parent 6; Updated, 2 parents 4; New id, 2 parents 5; New id, > 2 parents 1;

Hairpin Loop Motif Atlas Release 4.7 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 4.7

Download

CSV

JSON

annotations