#Varna 2DMotifNum NtsInstances
1
  • IL_86319.1
IL_86319.1
  • Basepair signature: cWW-cWW-cWW
  • History status: New id, > 2 parents
  • UU cWW (6)
  • CC cWW (5)
  • Isolated cWH basepair (3)
  • CA cWW (3)
  • AA cWW (2)
  • Self complementary (2)
  • CA cWW with bulged A (1)
  • UU cWW water inserted (1)
  • Isolated near basepair (1)
  • UG cWW (1)
  • 6271
    2
    • IL_37497.4
    IL_37497.4
    • Basepair signature: cWW-L-cWW
    • History status: Updated, 1 parent
  • Single bulged A (89)
  • Major groove intercalation (4)
  • 5116
    3
    • IL_83039.15
    IL_83039.15
    • Basepair signature: cWW-L-cWW
    • History status: Updated, 1 parent
  • Single bulged U (82)
  • 5114
    4
    • IL_08424.1
    IL_08424.1
    • Basepair signature: cWW-cHW-cWW
    • History status: New id, > 2 parents
  • Isolated cWH basepair (37)
  • UU cWW (2)
  • Multiple bulged bases, near cWW (1)
  • UC cWW (1)
  • 668
    5
    • IL_30621.3
    IL_30621.3
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (47)
  • Self complementary (1)
  • 865
    6
    • IL_00225.3
    IL_00225.3
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Single bulged G (32)
  • Stack outside cWW (1)
  • 542
    7
    • IL_61258.12
    IL_61258.12
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Single bulged C (33)
  • 540
    8
    • IL_27635.3
    IL_27635.3
    • Basepair signature: cWW-cSH-cWW
    • History status: Updated, 1 parent
  • Major groove platform (33)
  • Major groove platform; stack outside cWW (1)
  • 538
    9
    • IL_76488.2
    IL_76488.2
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Single stack bend (26)
  • Single stack bend with bulge (1)
  • Not an internal loop (1)
  • 536
    10
    • IL_16396.2
    IL_16396.2
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (12)
  • Major groove outside cWW, minor groove, intercalation pocket (6)
  • Basepair outside cWW (3)
  • Stack outside cWW (3)
  • Major groove intercalation (2)
  • Major groove platform outside cWW (2)
  • Major groove outside cWW, intercalation pocket (1)
  • 435
    11
    • IL_09705.10
    IL_09705.10
    • Basepair signature: cWW-tSH-tHS-cWW
    • History status: Updated, 1 parent
  • Double sheared (23)
  • tWS-tSW (1)
  • 833
    12
    • IL_42622.2
    IL_42622.2
    • Basepair signature: cWW-cSH-cWW
    • History status: Exact match
  • Minor groove platform (27)
  • Multiple bulged bases (1)
  • 533
    13
    • IL_56467.8
    IL_56467.8
    • Basepair signature: cWW-tSH-tSH-tHS-cWW
    • History status: Exact match
  • Triple sheared (26)
  • 1029
    14
    • IL_52767.3
    IL_52767.3
    • Basepair signature: cWW-L-R-cWW
    • History status: Updated, 2 parents
  • Isolated cWS basepair (10)
  • Isolated near basepair (6)
  • Intercalated cWW (1)
  • Self complementary (1)
  • Single bulged G, near cWW (1)
  • 629
    15
    • IL_70923.2
    IL_70923.2
    • Basepair signature: cWW-tSS-tSH-L-tHS-tHS-cWW
    • History status: Exact match
  • Kink-turn (18)
  • 1228
    16
    • IL_50694.2
    IL_50694.2
    • Basepair signature: cWW-tSH-cWW-L
    • History status: Exact match
  • Major groove platform; stack outside cWW (26)
  • 627
    17
    • IL_17136.1
    IL_17136.1
    • Basepair signature: cWW-tSH-tHW-tHS-cWW
    • History status: Exact match
  • tSH-tHW-tHS (14)
  • AAA cross-strand stack (5)
  • UAA/GAN related (1)
  • UAA/GAN variation (1)
  • 1024
    18
    • IL_89002.2
    IL_89002.2
    • Basepair signature: cWW-tWH-L-tHS-cWW
    • History status: Exact match
  • UAA/GAN (16)
  • 920
    19
    • IL_82068.3
    IL_82068.3
    • Basepair signature: cWW-cWW-cWW
    • History status: Updated, 1 parent
  • Isolated non-canonical cWW with bulges (14)
  • 620
    20
    • IL_59677.2
    IL_59677.2
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (8)
  • 419
    21
    • IL_45067.2
    IL_45067.2
    • Basepair signature: cWW-tSS-L-tSH-L-R-R-cWW-L
    • History status: Exact match
  • Kink-turn (12)
  • Kink-turn with non-sequential stacking (5)
  • 1218
    22
    • IL_80727.1
    IL_80727.1
    • Basepair signature: cWW-cWW-cWW
    • History status: New id, > 2 parents
  • Isolated non-canonical cWW with bulges (3)
  • Self complementary (1)
  • Single bulged G, near cWW (1)
  • Decoding loop with one bulged A (1)
  • Decoding loop related (1)
  • Other IL (1)
  • 617
    23
    • IL_93353.1
    IL_93353.1
    • Basepair signature: cWW-tHS-cWW
    • History status: Exact match
  • Minor groove platform (13)
  • Not an internal loop (1)
  • 517
    24
    • IL_71530.2
    IL_71530.2
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (11)
  • 416
    25
    • IL_04346.7
    IL_04346.7
    • Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 8x7 Sarcin-Ricin; G-bulge (13)
  • 1515
    26
    • IL_38958.7
    IL_38958.7
    • Basepair signature: cWW-tHS-cWW
    • History status: Exact match
  • Isolated tHS basepair with bulges (13)
  • 615
    27
    • IL_09061.6
    IL_09061.6
    • Basepair signature: cWW-cWS-cSH-cWW
    • History status: Exact match
  • Major groove minor groove platform; mini C-loop (13)
  • 614
    28
    • IL_05564.2
    IL_05564.2
    • Basepair signature: cWW-cSH-cWW-cWW
    • History status: Exact match
  • Major groove platform with extra cWW (8)
  • 714
    29
    • IL_63596.6
    IL_63596.6
    • Basepair signature: cWW-cWS-cSH-tWH-cWW-L
    • History status: Exact match
  • C-loop (13)
  • 714
    30
    • IL_69996.1
    IL_69996.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Major groove outside cWW, minor groove, intercalation pocket (3)
  • Multiple bulged bases (1)
  • Minor groove platform (1)
  • Single bulged A (1)
  • 414
    31
    • IL_92788.2
    IL_92788.2
    • Basepair signature: cWW-L-R-L-cWW-L
    • History status: Exact match
  • Major groove minor groove platform with extra cWW (7)
  • Isolated basepair with bulged bases (3)
  • Minor groove platform with extra cWW (1)
  • 814
    32
    • IL_82842.2
    IL_82842.2
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Intercalated tWH (6)
  • Intercalated cWW (2)
  • Stack and bulge (2)
  • Not an internal loop (1)
  • Decoding loop related (1)
  • 514
    33
    • IL_04059.1
    IL_04059.1
    • Basepair signature: cWW-tWH-tHS-cWW
    • History status: Exact match
  • tSH-tHW (11)
  • Other IL (1)
  • 813
    34
    • IL_45612.2
    IL_45612.2
    • Basepair signature: cWW-L-R-L-cWW-L
    • History status: Updated, 1 parent
    812
    35
    • IL_15861.7
    IL_15861.7
    • Basepair signature: cWW-L-cWW-L-L-R-cSH
    • History status: Exact match
  • SSU/LSU pseudoknot (10)
  • 1012
    36
    • IL_44546.1
    IL_44546.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (8)
  • 012
    37
    • IL_64417.1
    IL_64417.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Decoding loop related (12)
  • 512
    38
    • IL_90933.2
    IL_90933.2
    • Basepair signature: cWW-cWW-cWW
    • History status: Exact match
  • Isolated non-canonical cWW with bulges (8)
  • Isolated basepair with bulged bases (1)
  • 611
    39
    • IL_88739.1
    IL_88739.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Major groove outside cWW, minor groove, intercalation pocket (7)
  • Minor groove platform (1)
  • Major groove minor groove platform; mini C-loop (1)
  • 511
    40
    • IL_53448.1
    IL_53448.1
    • Basepair signature: cWW-tWH-cSH-cWW
    • History status: Exact match
  • Receptor of 11-nt loop-receptor motif (11)
  • 811
    41
    • IL_58764.3
    IL_58764.3
    • Basepair signature: cWW-L-R-L-R-L-cWW
    • History status: Exact match
  • Minor groove platform related (3)
  • Tandem non-canonical cWW pairs (2)
  • Multiple bulged bases with non-canonical cWW (1)
  • UAA/GAN variation (1)
  • Decoding loop related (1)
  • 911
    42
    • IL_71110.1
    IL_71110.1
    • Basepair signature: cWW-cWW-L-R-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (8)
  • Other IL (1)
  • 810
    43
    • IL_92001.1
    IL_92001.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Single stack bend (7)
  • Other IL (1)
  • Single base bend (1)
  • 510
    44
    • IL_76223.2
    IL_76223.2
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Major groove platform (7)
  • Other IL (1)
  • 510
    45
    • IL_95601.3
    IL_95601.3
    • Basepair signature: cWW-tSH-cWW
    • History status: Exact match
  • Minor groove platform with intercalation (6)
  • Major groove minor groove platform; mini C-loop (1)
  • Minor groove platform (1)
  • 510
    46
    • IL_93341.1
    IL_93341.1
    • Basepair signature: cWW-cWW-cSH-cSH-cWW
    • History status: Exact match
  • 8-nt loop receptor (5)
  • 09
    47
    • IL_51265.2
    IL_51265.2
    • Basepair signature: cWW-tSS-tSH-L-tHS-cWW
    • History status: Exact match
  • Kink-turn from U4 (5)
  • Kink-turn (3)
  • Kink-turn from T-box riboswitch (1)
  • 09
    48
    • IL_05145.2
    IL_05145.2
    • Basepair signature: cWW-cWW-cWW-cWW-cWW
    • History status: Exact match
  • Other IL (1)
  • 09
    49
    • IL_19389.6
    IL_19389.6
    • Basepair signature: cWW-L-cWW-cSH
    • History status: Exact match
  • Major groove platform with intercalated tWH (5)
  • Other IL (1)
  • 09
    50
    • IL_77691.2
    IL_77691.2
    • Basepair signature: cWW-tSH-tHS-L-cWW
    • History status: Updated, 1 parent
  • UAA/GAN related (5)
  • UAA/GAN (1)
  • 99
    51
    • IL_76042.2
    IL_76042.2
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 7x6 Sarcin-Ricin; G-bulge (7)
  • Sarcin-Ricin target in LSU H95; G-bulge (1)
  • 139
    52
    • IL_67743.1
    IL_67743.1
    • Basepair signature: cWW-cWW-cWH-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (3)
  • 89
    53
    • IL_04668.2
    IL_04668.2
    • Basepair signature: cWW-cWW-cWW-L-R-L-R-cWW
    • History status: Updated, 1 parent
  • Tandem non-canonical cWW pairs with near WC pairs (1)
  • Other IL (1)
  • 128
    54
    • IL_76389.1
    IL_76389.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (7)
  • Intercalation pocket (1)
  • 48
    55
    • IL_90802.1
    IL_90802.1
    • Basepair signature: cWW-cWW-cWW-cWW
    • History status: Exact match
  • Tandem non-canonical cWW pairs (7)
  • 08
    56
    • IL_75255.1
    IL_75255.1
    • Basepair signature: cWW-cSH-cWS-cSH-tWH-cWW
    • History status: Exact match
  • C-loop (5)
  • 78
    57
    • IL_54997.7
    IL_54997.7
    • Basepair signature: cWW-tWW-cWW
    • History status: Exact match
  • Isolated tWW turn (7)
  • 08
    58
    • IL_63450.2
    IL_63450.2
    • Basepair signature: cWW-cWW-cSH-cWW
    • History status: Exact match
  • Major groove platform with extra pair (4)
  • 08
    59
    • IL_58103.6
    IL_58103.6
    • Basepair signature: cWW-cWS-L-tSW-L-cWW
    • History status: Exact match
  • Symmetric double minor groove platform (6)
  • Minor groove platform (1)
  • 88
    60
    • IL_65969.2
    IL_65969.2
    • Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
    • History status: Exact match
  • tSH-tSH-tHH-tHS (5)
  • 128
    61
    • IL_73886.1
    IL_73886.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Basepair outside cWW, intercalation pocket (5)
  • 48
    62
    • IL_07235.1
    IL_07235.1
    • Basepair signature: cWW-tSH-L-tHS-cWW
    • History status: Exact match
  • UAA/GAN (3)
  • UAA/GAN variation (3)
  • 98
    63
    • IL_37712.2
    IL_37712.2
    • Basepair signature: cWW-L-cWW-L-L
    • History status: Exact match
  • C-loop (4)
  • Major groove minor groove platform with tHH (2)
  • 77
    64
    • IL_83162.5
    IL_83162.5
    • Basepair signature: cWW-tSH-L-tHH-L-cWW
    • History status: Exact match
    107
    65
    • IL_16458.1
    IL_16458.1
    • Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-cWW
    • History status: Exact match
  • Sarcin-Ricin target in LSU H95; G-bulge (4)
  • 7x6 Sarcin-Ricin; G-bulge (1)
  • 8x6 Sarcin-Ricin with inserted A; G-bulge (1)
  • 7x6 Sarcin-Ricin with UU cWW pair; G-bulge (1)
  • 137
    66
    • IL_90991.6
    IL_90991.6
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Multiple bulged bases (6)
  • 47
    67
    • IL_48100.2
    IL_48100.2
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • 180 degree turn (1)
  • 57
    68
    • IL_15052.1
    IL_15052.1
    • Basepair signature: cWW-cSH-cWS-cWW
    • History status: Exact match
  • Minor groove platform (7)
  • 67
    69
    • IL_17470.6
    IL_17470.6
    • Basepair signature: cWW-tWW-L-R-tWH-L-cWW
    • History status: Exact match
  • tHW-tHW cross-strand stack (3)
  • 117
    70
    • IL_53251.2
    IL_53251.2
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
    67
    71
    • IL_66414.6
    IL_66414.6
    • Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW
    • History status: Exact match
  • Triple sheared with non-canonical cWW (6)
  • 147
    72
    • IL_23164.1
    IL_23164.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    06
    73
    • IL_02284.6
    IL_02284.6
    • Basepair signature: cWW-L-R-cWW
    • History status: Updated, 2 parents
  • Decoding loop related (1)
  • 66
    74
    • IL_90538.4
    IL_90538.4
    • Basepair signature: cWW-tSS-tSH-L-tHS-R-cWW-L-L
    • History status: Exact match
  • Kink-turn (5)
  • 136
    75
    • IL_56455.3
    IL_56455.3
    • Basepair signature: cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
    • History status: Exact match
  • Bacterial 5S Loop E (6)
  • 186
    76
    • IL_25186.1
    IL_25186.1
    • Basepair signature: cWW-L-R-L-R-cWW-cWW
    • History status: Exact match
    06
    77
    • IL_60992.6
    IL_60992.6
    • Basepair signature: cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
    • History status: Exact match
    166
    78
    • IL_04650.1
    IL_04650.1
    • Basepair signature: cWW-cSH-cWW-L-L-R-L
    • History status: Exact match
  • Minor groove platform (2)
  • 06
    79
    • IL_46796.1
    IL_46796.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
  • Minor groove platform with extra cWW (2)
  • 76
    80
    • IL_07486.1
    IL_07486.1
    • Basepair signature: cWW-tSS-tSH-L-tHS-cWW-cWW
    • History status: Exact match
  • Kink-turn (5)
  • 06
    81
    • IL_58686.2
    IL_58686.2
    • Basepair signature: cWW-cWW-L-R-cSH-cWW
    • History status: Exact match
  • Multiple bulged bases with near cWW (1)
  • 06
    82
    • IL_76308.4
    IL_76308.4
    • Basepair signature: cWW-tSH-tHW-L-R-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHS-cWW (5)
  • Tandem non-canonical cWW pairs with near WC pairs (1)
  • 126
    83
    • IL_16386.1
    IL_16386.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Intercalated cWS (1)
  • 55
    84
    • IL_23544.2
    IL_23544.2
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    75
    85
    • IL_47263.2
    IL_47263.2
    • Basepair signature: cWW-tSH-cSH-cWW
    • History status: Exact match
  • Major groove platform with extra pair (5)
  • 05
    86
    • IL_12566.2
    IL_12566.2
    • Basepair signature: cWW-L-tHS-L-cWW-L
    • History status: Exact match
    95
    87
    • IL_62552.1
    IL_62552.1
    • Basepair signature: cWW-L-cWW-L-L-R-L
    • History status: Exact match
    05
    88
    • IL_02509.1
    IL_02509.1
    • Basepair signature: cWW-tSW-cWS-cSH-tWH-R-R-cWW
    • History status: Exact match
  • C-loop (4)
  • 05
    89
    • IL_21270.1
    IL_21270.1
    • Basepair signature: cWW-tSH-cWS-cWW
    • History status: Exact match
  • tSH-tHW (1)
  • Other IL (1)
  • 85
    90
    • IL_57188.3
    IL_57188.3
    • Basepair signature: cWW-cSH-tWW-L-tWW-cWW-cSH
    • History status: Exact match
    115
    91
    • IL_21676.1
    IL_21676.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: New id, 2 parents
  • cWH basepair with bulged bases (1)
  • 75
    92
    • IL_54678.5
    IL_54678.5
    • Basepair signature: cWW-cWW
    • History status: Exact match
  • Minor groove platform with intercalation (1)
  • 45
    93
    • IL_81589.2
    IL_81589.2
    • Basepair signature: cWW-L-R-cHW-cWW-L-L-tSW-L
    • History status: Exact match
    05
    94
    • IL_65006.1
    IL_65006.1
    • Basepair signature: cWW-L-cWW-cWW
    • History status: Exact match
  • Minor groove platform with extra cWW (3)
  • 75
    95
    • IL_69145.1
    IL_69145.1
    • Basepair signature: cWW-L-cWW-L
    • History status: Exact match
  • Pseudoknot (3)
  • 05
    96
    • IL_45944.3
    IL_45944.3
    • Basepair signature: cWW-L-cWW-L-tWH-L-R-L
    • History status: Exact match
    05
    97
    • IL_17069.3
    IL_17069.3
    • Basepair signature: cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
    • History status: Exact match
  • Kink-turn related (5)
  • 135
    98
    • IL_65510.1
    IL_65510.1
    • Basepair signature: cWW-L-cWW-L-L-R-L
    • History status: Exact match
    05
    99
    • IL_49767.5
    IL_49767.5
    • Basepair signature: cWW-cWW-tWH-L-tHS-cWW
    • History status: Exact match
  • UAA/GAN with extra cWW (5)
  • 115
    100
    • IL_04638.1
    IL_04638.1
    • Basepair signature: cWW-tSH-tHW-tHS-cSH-cWW-L
    • History status: Exact match
  • tSH-tHS-tHW (3)
  • 135
    101
    • IL_58502.1
    IL_58502.1
    • Basepair signature: cWW-cWW-L-R-L-cWW
    • History status: Exact match
  • Major groove platform with intercalation (1)
  • 05
    102
    • IL_19954.2
    IL_19954.2
    • Basepair signature: cWW-tSH-tSH-tHS-cWW-cWW
    • History status: Exact match
    125
    103
    • IL_47078.1
    IL_47078.1
    • Basepair signature: cWW-cWS-L-cWW-L
    • History status: Exact match
  • Minor groove platform (5)
  • 75
    104
    • IL_80604.2
    IL_80604.2
    • Basepair signature: cWW-cWW-tWH-tWH-tHW-tHW-cWW
    • History status: Exact match
  • tWH-tWH-tHW-tHW (3)
  • 145
    105
    • IL_08296.3
    IL_08296.3
    • Basepair signature: cWW-L-tHS-L-cWW
    • History status: Exact match
    84
    106
    • IL_68506.1
    IL_68506.1
    • Basepair signature: cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW
    • History status: Exact match
    04
    107
    • IL_76319.2
    IL_76319.2
    • Basepair signature: cWW-L-cWS-cWW
    • History status: Exact match
  • Isolated cWS basepair (2)
  • 74
    108
    • IL_33912.1
    IL_33912.1
    • Basepair signature: cWW-L-R-L-cWW-L
    • History status: Exact match
    04
    109
    • IL_93630.2
    IL_93630.2
    • Basepair signature: cWW-L-R-L-cWW-L-L
    • History status: Exact match
  • C-loop with extra cWW pair (1)
  • 04
    110
    • IL_29346.1
    IL_29346.1
    • Basepair signature: cWW-L-cWW-L-L
    • History status: Exact match
  • Left turn (3)
  • 74
    111
    • IL_88269.3
    IL_88269.3
    • Basepair signature: cWW-L-R-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 6x5 Sarcin-Ricin; G-bulge (3)
  • tSH-tHW-tWW (1)
  • 114
    112
    • IL_24606.2
    IL_24606.2
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
    • History status: Exact match
  • 8x6 Sarcin-Ricin with inserted Y; G-bulge (3)
  • 144
    113
    • IL_74697.2
    IL_74697.2
    • Basepair signature: cWW-cWW-L-R-L-cWW
    • History status: Updated, 1 parent
  • Decoding loop related (1)
  • 04
    114
    • IL_06136.1
    IL_06136.1
    • Basepair signature: cWW-tSH-tSH-tHS-tHS-cWW
    • History status: Exact match
  • Quadruple sheared (4)
  • 04
    115
    • IL_38862.1
    IL_38862.1
    • Basepair signature: cWW-L-R-tWH-tHS-cWW
    • History status: Exact match
  • 5x5 Sarcin-Ricin with intercalated A; G-bulge (2)
  • tSH-tHW-tHS (2)
  • 104
    116
    • IL_93830.3
    IL_93830.3
    • Basepair signature: cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
    • History status: Exact match
  • 7x7 Sarcin-Ricin with intercalated A; G-bulge (3)
  • 144
    117
    • IL_19557.3
    IL_19557.3
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Isolated cWH basepair (1)
  • 04
    118
    • IL_97697.1
    IL_97697.1
    • Basepair signature: cWW-L-R-L-R-L-cWW-L-L
    • History status: Exact match
  • Reverse turn (4)
  • 04
    119
    • IL_49460.2
    IL_49460.2
    • Basepair signature: cWW-L-R-L-R-L-cWW-L
    • History status: Exact match
    104
    120
    • IL_30542.3
    IL_30542.3
    • Basepair signature: cWW-L-R-L-cWW-L
    • History status: Exact match
    04
    121
    • IL_75461.4
    IL_75461.4
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    74
    122
    • IL_44312.2
    IL_44312.2
    • Basepair signature: cWW-tWH-R-cSH-cWW
    • History status: Updated, 1 parent
  • Receptor of 11-nt loop-receptor motif (2)
  • 04
    123
    • IL_55178.1
    IL_55178.1
    • Basepair signature: cWW-cWW-tWW-cWW
    • History status: Exact match
  • tWW and near cWH (1)
  • Non canonical cWW and near pair (1)
  • Tandem non-canonical cWW pairs (1)
  • tWW and non-canonical cWW (1)
  • 84
    124
    • IL_50715.1
    IL_50715.1
    • Basepair signature: cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
    • History status: Exact match
    214
    125
    • IL_04655.1
    IL_04655.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    04
    126
    • IL_55953.3
    IL_55953.3
    • Basepair signature: cWW-tSH-tHS-R-L-L-R-cWW
    • History status: Exact match
    04
    127
    • IL_18471.2
    IL_18471.2
    • Basepair signature: cWW-cSH-cWW-cWW
    • History status: Exact match
  • Major groove platform with extra cWW (2)
  • 04
    128
    • IL_18472.2
    IL_18472.2
    • Basepair signature: cWW-L-R-L-cWW-L
    • History status: Exact match
  • Symmetric double minor groove platform (1)
  • 83
    129
    • IL_87284.1
    IL_87284.1
    • Basepair signature: cWW-tSH-tHW-tWH-tHS-cWW
    • History status: Exact match
  • tSH-tHW-tWH-tHS (3)
  • 03
    130
    • IL_41507.1
    IL_41507.1
    • Basepair signature: cWW-cWW-L-R-tHS-cWW
    • History status: Exact match
  • Triple sheared (1)
  • 103
    131
    • IL_68574.2
    IL_68574.2
    • Basepair signature: cWW-tHH-tHS-cWW
    • History status: Exact match
    83
    132
    • IL_02349.4
    IL_02349.4
    • Basepair signature: cWW-tSH-tWH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 8x6 Sarcin-Ricin with bulged A; G-bulge (2)
  • 03
    133
    • IL_34470.2
    IL_34470.2
    • Basepair signature: cWW-cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
  • 9x8 Sarcin-Ricin with GA cWW pair; G-bulge (2)
  • 9x9 Sarcin-Ricin with pseudoknotted region; G-bulge (1)
  • 03
    134
    • IL_47298.1
    IL_47298.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    03
    135
    • IL_64879.2
    IL_64879.2
    • Basepair signature: cWW-L-R-tSH-L-R-L-cWW
    • History status: Exact match
  • Triple sheared related (2)
  • 113
    136
    • IL_58960.1
    IL_58960.1
    • Basepair signature: cWW-L-cWW-L-tWW-L-R-L
    • History status: Exact match
    03
    137
    • IL_96303.1
    IL_96303.1
    • Basepair signature: cWW-cSH-tSW-tHW-cWW-L-L-R-L-R
    • History status: Exact match
    03
    138
    • IL_34739.1
    IL_34739.1
    • Basepair signature: cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R
    • History status: Exact match
    03
    139
    • IL_05192.1
    IL_05192.1
    • Basepair signature: cWW-L-R-L-R-L-cWW
    • History status: Exact match
    03
    140
    • IL_64900.1
    IL_64900.1
    • Basepair signature: cWW-cWW-tSS-tSH-L-tHS-R-cWW-L
    • History status: Exact match
  • Kink-turn (3)
  • 03
    141
    • IL_09129.1
    IL_09129.1
    • Basepair signature: cWW-tWH-tWH-L-R-L-R-tWW-cWW
    • History status: Exact match
    143
    142
    • IL_42334.1
    IL_42334.1
    • Basepair signature: cWW-L-R-L-R-cWW
    • History status: Exact match
  • Non canonical cWW and near pair (1)
  • Tandem non-canonical cWW pairs (1)
  • 03
    143
    • IL_84698.1
    IL_84698.1
    • Basepair signature: cWW-L-cSW-cWW
    • History status: Exact match
  • Other IL (1)
  • 03
    144
    • IL_35728.2
    IL_35728.2
    • Basepair signature: cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHH-tHS (1)
  • 9x8 Sarcin-Ricin; G-bulge (1)
  • 03
    145
    • IL_81945.1
    IL_81945.1
    • Basepair signature: cWW-cWW-cWW
    • History status: New id, 1 parent
    63
    146
    • IL_65851.2
    IL_65851.2
    • Basepair signature: cWW-L-R-tSH-tHW-tHS-cWW-cWW
    • History status: Exact match
  • tSH-tHW-tHS with extra cWW pairs (1)
  • 03
    147
    • IL_75283.2
    IL_75283.2
    • Basepair signature: cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
    • History status: Exact match
    03
    148
    • IL_10207.2
    IL_10207.2
    • Basepair signature: cWW-L-R-L-cSH-cSW-L-R-L-cWW-cWW
    • History status: Exact match
    03
    149
    • IL_19724.2
    IL_19724.2
    • Basepair signature: cWW-L-cWW-L-cSH
    • History status: Exact match
    03
    150
    • IL_69440.1
    IL_69440.1
    • Basepair signature: cWW-L-R-cSH-cWW
    • History status: Exact match
    83
    151
    • IL_36143.3
    IL_36143.3
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    53
    152
    • IL_07144.1
    IL_07144.1
    • Basepair signature: cWW-L-R-L-R-L-cWW-L
    • History status: Exact match
  • Other IL (1)
  • 103
    153
    • IL_26728.2
    IL_26728.2
    • Basepair signature: cWW-cSH-R-cSH-cWW-cWW
    • History status: Updated, 1 parent
    03
    154
    • IL_60192.2
    IL_60192.2
    • Basepair signature: cWW-tSH-tSH-tSS-tHS-L-R-cWW
    • History status: Exact match
  • Kink-turn (2)
  • 03
    155
    • IL_36973.6
    IL_36973.6
    • Basepair signature: cWW-tSH-L-R-L-R-L-R-cWW-cWW
    • History status: Exact match
    03
    156
    • IL_63797.2
    IL_63797.2
    • Basepair signature: cWW-cWS-cWW
    • History status: Exact match
  • Minor groove platform (1)
  • Major groove outside cWW, minor groove, intercalation pocket (1)
  • 03
    157
    • IL_82426.4
    IL_82426.4
    • Basepair signature: cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R
    • History status: Exact match
    03
    158
    • IL_26785.1
    IL_26785.1
    • Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW
    • History status: Exact match
  • 10x8 Sarcin-Ricin; G-bulge (3)
  • 03
    159
    • IL_90318.1
    IL_90318.1
    • Basepair signature: cWW-tSH-L-R-L-R-cWW
    • History status: Exact match
  • UAA/GAN with extra pair (3)
  • 03
    160
    • IL_64181.2
    IL_64181.2
    • Basepair signature: cWW-L-tHS-cWW-cWW-cWW
    • History status: Exact match
    113
    161
    • IL_74051.1
    IL_74051.1
    • Basepair signature: cWW-tSS-tSH-L-tHS-cWW-L
    • History status: Exact match
  • Kink-turn (1)
  • 03
    162
    • IL_17806.1
    IL_17806.1
    • Basepair signature: cWW-L-cWW-cWW
    • History status: New id, 2 parents
    03
    163
    • IL_67474.4
    IL_67474.4
    • Basepair signature: cWW-L-cWW-L
    • History status: Exact match
    63
    164
    • IL_27393.7
    IL_27393.7
    • Basepair signature: cWW-L-cWW-L-L-R
    • History status: Exact match
    03
    165
    • IL_39753.1
    IL_39753.1
    • Basepair signature: cWW-L-R-tWH-L-R-L-cWW-cWW
    • History status: Exact match
  • tWH-tWH-tHW-tHW (1)
  • 133
    166
    • IL_86929.2
    IL_86929.2
    • Basepair signature: cWW-L-R-tHS-tHS-cWW-cWW
    • History status: Exact match
  • Triple sheared with non-canonical cWW (1)
  • 123
    167
    • IL_70627.2
    IL_70627.2
    • Basepair signature: cWW-tWH-L-R-cWW
    • History status: Exact match
    83
    168
    • IL_64509.1
    IL_64509.1
    • Basepair signature: cWW-tWW-tWW-tSS-L-cWW
    • History status: Exact match
  • Kink-turn related (1)
  • 02
    169
    • IL_74125.1
    IL_74125.1
    • Basepair signature: cWW-L-cWW-L
    • History status: Exact match
    02
    170
    • IL_53749.1
    IL_53749.1
    • Basepair signature: cWW-L-cWW-L-L-R-L-R-L
    • History status: Exact match
    02
    171
    • IL_37722.1
    IL_37722.1
    • Basepair signature: cWW-L-tSH-L-tHW-tHS-R-cWW-L
    • History status: Exact match
  • Kink-turn (1)
  • 142
    172
    • IL_28026.1
    IL_28026.1
    • Basepair signature: cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
    • History status: Exact match
    142
    173
    • IL_96141.1
    IL_96141.1
    • Basepair signature: cWW-L-R-tSH-L-R-cWW
    • History status: Exact match
  • Triple sheared (1)
  • tSH-tHS-tWS (1)
  • 102
    174
    • IL_45371.1
    IL_45371.1
    • Basepair signature: cWW-cWW-L-R-cWW
    • History status: Exact match
    02
    175
    • IL_53762.1
    IL_53762.1
    • Basepair signature: cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
    • History status: Exact match
    02
    176
    • IL_80884.1
    IL_80884.1
    • Basepair signature: cWW-L-cWW-L-cWW-L-L
    • History status: Exact match
    02
    177
    • IL_23992.1
    IL_23992.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-cWW
    • History status: Exact match
    02
    178
    • IL_38394.1
    IL_38394.1
    • Basepair signature: cWW-tWH-cWW-L-L-R-L
    • History status: Exact match
  • Stack outside cWW (1)
  • 02
    179
    • IL_74284.1
    IL_74284.1
    • Basepair signature: cWW-L-R-L-R-L-R-cWW
    • History status: Exact match
    02
    180
    • IL_84251.1
    IL_84251.1
    • Basepair signature: cWW-L-tHS-cWW
    • History status: Exact match
    02
    181
    • IL_42032.1
    IL_42032.1
    • Basepair signature: cWW-cSH-cWW-tWH-L-cWW-L-L
    • History status: Exact match
    112
    182
    • IL_52493.1
    IL_52493.1
    • Basepair signature: cWW-L-cWW-L-L
    • History status: Exact match
    02
    183
    • IL_76458.1
    IL_76458.1
    • Basepair signature: cWW-cSH-L-cWW
    • History status: Exact match
  • Minor groove platform (1)
  • 02
    184
    • IL_81522.1
    IL_81522.1
    • Basepair signature: cWW-cWS-L-cWW
    • History status: Exact match
  • Major groove minor groove platform with intercalation; mini C-loop (2)
  • 02
    185
    • IL_38634.5
    IL_38634.5
    • Basepair signature: cWW-cWH-L-R-cWW
    • History status: Exact match
  • cWH basepair and non-canonical AC (2)
  • 02
    186
    • IL_74684.1
    IL_74684.1
    • Basepair signature: cWW-L-cWW-L
    • History status: Exact match
    02
    187
    • IL_52708.1
    IL_52708.1
    • Basepair signature: cWW-tSS-cWW
    • History status: Exact match
    02
    188
    • IL_02656.1
    IL_02656.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-cWW
    • History status: Exact match
  • Other IL (1)
  • 02
    189
    • IL_38684.1
    IL_38684.1
    • Basepair signature: cWW-L-cWW-cWW
    • History status: Exact match
    02
    190
    • IL_57273.1
    IL_57273.1
    • Basepair signature: cWW-cWW-L-R-L-R-L-R-L-R-L-R-cWW
    • History status: Exact match
  • tSH-tHW-tHH-tHS (1)
  • 02
    191
    • IL_93699.1
    IL_93699.1
    • Basepair signature: cWW-L-R-L-R-L-tHS-L-cWW-L
    • History status: Exact match
  • Kink-turn (1)
  • 132
    192
    • IL_30149.1
    IL_30149.1
    • Basepair signature: cWW-L-R-L-R-tWH-L-R-L-R-L-cWW
    • History status: Exact match
    142
    193
    • IL_59302.1
    IL_59302.1
    • Basepair signature: cWW-L-R-L-cWW-L
    • History status: Exact match
    02
    194
    • IL_88613.1
    IL_88613.1
    • Basepair signature: cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
    • History status: Exact match
    02
    195
    • IL_22046.1
    IL_22046.1
    • Basepair signature: cWW-L-cWW-L-cWW-L
    • History status: Exact match
  • Other IL (1)
  • 02
    196
    • IL_34822.1
    IL_34822.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW
    • History status: Exact match
    02
    197
    • IL_73448.1
    IL_73448.1
    • Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R-L
    • History status: Exact match
    02
    198
    • IL_81631.1
    IL_81631.1
    • Basepair signature: cWW-L-R-cSH-R-R-L-R-cWW
    • History status: Exact match
  • 5x5 Sarcin-Ricin with intercalated A; G-bulge (1)
  • 02
    199
    • IL_91592.1
    IL_91592.1
    • Basepair signature: cWW-L-tHH-L-cWW-L-L
    • History status: Exact match
    02
    200
    • IL_48431.1
    IL_48431.1
    • Basepair signature: cWW-L-R-L-R-L-cWW
    • History status: Exact match
    02
    201
    • IL_57343.1
    IL_57343.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-cWW
    • History status: Exact match
    02
    202
    • IL_69313.1
    IL_69313.1
    • Basepair signature: cWW-tWH-tHH-tHS-cWW
    • History status: Exact match
    02
    203
    • IL_15174.1
    IL_15174.1
    • Basepair signature: cWW-L-R-L-R-L-cWW-cSS-cWW-L
    • History status: Exact match
    02
    204
    • IL_22248.1
    IL_22248.1
    • Basepair signature: cWW-cWW-cSH-cWW-L
    • History status: Exact match
  • Other IL (1)
  • 82
    205
    • IL_25960.1
    IL_25960.1
    • Basepair signature: cWW-L-R-L-R-L-cWW-L-L
    • History status: Exact match
    02
    206
    • IL_58032.1
    IL_58032.1
    • Basepair signature: cWW-tWH-cWW-L-L-R
    • History status: Exact match
  • Major groove platform; stack outside cWW (1)
  • 02
    207
    • IL_53206.1
    IL_53206.1
    • Basepair signature: cWW-L-R-L-R-cWW
    • History status: Exact match
    82
    208
    • IL_77870.1
    IL_77870.1
    • Basepair signature: cWW-L-R-L-tHS-L-cWW-L-cWW
    • History status: Exact match
    132
    209
    • IL_99670.1
    IL_99670.1
    • Basepair signature: cWW-cSH-cWS-cWW-cWW
    • History status: Exact match
    02
    210
    • IL_15218.1
    IL_15218.1
    • Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R-L
    • History status: Exact match
    02
    211
    • IL_55023.1
    IL_55023.1
    • Basepair signature: cWW-tSH-L-cWW
    • History status: Exact match
    02
    212
    • IL_10447.1
    IL_10447.1
    • Basepair signature: cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
    • History status: Exact match
    02
    213
    • IL_78349.1
    IL_78349.1
    • Basepair signature: cWW-L-R-L-R-L-cWW-L-cWW-L
    • History status: Exact match
    142
    214
    • IL_46559.1
    IL_46559.1
    • Basepair signature: cWW-L-tHH-L-R-L-cWW-L-R
    • History status: Exact match
    02
    215
    • IL_95004.1
    IL_95004.1
    • Basepair signature: cWW-cWH-R-L-cWW-L-L
    • History status: Exact match
    02
    216
    • IL_10484.1
    IL_10484.1
    • Basepair signature: cWW-tSH-tHS-cWW
    • History status: Exact match
  • Double sheared (2)
  • 02
    217
    • IL_19897.1
    IL_19897.1
    • Basepair signature: cWW-L-cWW-L-L-tWH-R-L
    • History status: New id, 1 parent
    02
    218
    • IL_55871.1
    IL_55871.1
    • Basepair signature: cWW-tSH-L-R-L-R-L-R-L-R-L-cWW
    • History status: Exact match
    02
    219
    • IL_27086.1
    IL_27086.1
    • Basepair signature: cWW-tWW-L-tWW-cWW-L
    • History status: Exact match
    02
    220
    • IL_01206.1
    IL_01206.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    02
    221
    • IL_53581.1
    IL_53581.1
    • Basepair signature: cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW
    • History status: Exact match
  • Kink-turn related (2)
  • 02
    222
    • IL_80581.1
    IL_80581.1
    • Basepair signature: cWW-cWW-L-R-L-cWW
    • History status: Exact match
    02
    223
    • IL_74114.1
    IL_74114.1
    • Basepair signature: cWW-cWS-cWW-L-R
    • History status: Exact match
    02
    224
    • IL_93211.1
    IL_93211.1
    • Basepair signature: cWW-cWS-cWW-L-R-cWW-L
    • History status: Exact match
    102
    225
    • IL_07703.1
    IL_07703.1
    • Basepair signature: cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
    • History status: Exact match
    02
    226
    • IL_11347.1
    IL_11347.1
    • Basepair signature: cWW-L-R-L-cWW-L
    • History status: Exact match
    02
    227
    • IL_44998.1
    IL_44998.1
    • Basepair signature: cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
    • History status: Exact match
    02
    228
    • IL_16073.1
    IL_16073.1
    • Basepair signature: cWW-L-cWW-L-cWW-L-L-L-R
    • History status: Exact match
    01
    229
    • IL_47108.1
    IL_47108.1
    • Basepair signature: cWW-L-R-L-tHH-L-cWW
    • History status: Exact match
    01
    230
    • IL_56105.1
    IL_56105.1
    • Basepair signature: cWW-tSH-tSH-cWW-L
    • History status: Exact match
    81
    231
    • IL_41414.1
    IL_41414.1
    • Basepair signature: cWW-L-R-L-cWW-tWH-cWW-L-L-L-R-L-R-cSH-L-L
    • History status: Exact match
    01
    232
    • IL_51191.1
    IL_51191.1
    • Basepair signature: cWW-L-R-L-cWW-L-L
    • History status: Exact match
    01
    233
    • IL_58809.1
    IL_58809.1
    • Basepair signature: cWW-tSS-L-R-L-R-L-R-L-cWW-L-L-R-L-R-L-L-R
    • History status: Exact match
    01
    234
    • IL_95961.1
    IL_95961.1
    • Basepair signature: cWW-tSH-L-cWW-L
    • History status: Exact match
    01
    235
    • IL_11882.1
    IL_11882.1
    • Basepair signature: cWW-L-R-tWH-tWH-L-R-L-cWW
    • History status: Exact match
    01
    236
    • IL_20463.1
    IL_20463.1
    • Basepair signature: cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R
    • History status: Exact match
  • 7x11 Sarcin-Ricin with pseudoknotted region; G-bulge (1)
  • 01
    237
    • IL_61300.1
    IL_61300.1
    • Basepair signature: cWW-cSS-tSS-L-tHW-cWW-L-R-L-R-L-R
    • History status: Exact match
    01
    238
    • IL_70801.1
    IL_70801.1
    • Basepair signature: cWW-cWW-L-R-tWW-L-R-L-cWW
    • History status: Exact match
    131
    239
    • IL_04736.1
    IL_04736.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW
    • History status: Exact match
    01
    240
    • IL_64842.1
    IL_64842.1
    • Basepair signature: cWW-L-tWH-L-cWW-L-cSH
    • History status: Exact match
    01
    241
    • IL_74184.1
    IL_74184.1
    • Basepair signature: cWW-L-tHS-L-cWW-L-L-L
    • History status: Exact match
    01
    242
    • IL_84205.1
    IL_84205.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    01
    243
    • IL_19023.1
    IL_19023.1
    • Basepair signature: cWW-cHW-L-cWW-L-L-R-L-R-L-R
    • History status: Exact match
    01
    244
    • IL_58819.1
    IL_58819.1
    • Basepair signature: cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW
    • History status: Exact match
    01
    245
    • IL_87290.1
    IL_87290.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L
    • History status: Exact match
    01
    246
    • IL_21121.1
    IL_21121.1
    • Basepair signature: cWW-tSW-cWS-cSH-tSW-tWH-R-R-cWW-cWW
    • History status: Exact match
    01
    247
    • IL_93585.1
    IL_93585.1
    • Basepair signature: cWW-L-cWW-L-cWW-tWH-L-cSH-L
    • History status: Exact match
    01
    248
    • IL_19048.1
    IL_19048.1
    • Basepair signature: cWW-L-R-L-R-L-cSH-L-R-cWW-cWW
    • History status: Exact match
    01
    249
    • IL_28564.1
    IL_28564.1
    • Basepair signature: cWW-L-R-L-cWW
    • History status: Exact match
    01
    250
    • IL_68633.1
    IL_68633.1
    • Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
    • History status: Exact match
  • 9x7 Sarcin-Ricin with inserted C; G-bulge (1)
  • 01
    251
    • IL_88190.1
    IL_88190.1
    • Basepair signature: cWW-L-R-tHS-L-R-L-R-cWW
    • History status: Exact match
    121
    252
    • IL_12750.1
    IL_12750.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW
    • History status: Exact match
    01
    253
    • IL_45488.1
    IL_45488.1
    • Basepair signature: cWW-cWW-L-R-tWH-L-R-cWW
    • History status: Exact match
    01
    254
    • IL_53787.1
    IL_53787.1
    • Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R-L-R
    • History status: Exact match
    01
    255
    • IL_62654.1
    IL_62654.1
    • Basepair signature: cWW-tSH-tHH-tHS-cWW
    • History status: Exact match
  • tSH-tHH-tHS (1)
  • 01
    256
    • IL_24499.1
    IL_24499.1
    • Basepair signature: cWW-cWS-L-R-L-R-cWW-L-cSH-L
    • History status: Exact match
    01
    257
    • IL_47972.1
    IL_47972.1
    • Basepair signature: cWW-L-R-L-cWW-L
    • History status: Exact match
    81
    258
    • IL_84409.1
    IL_84409.1
    • Basepair signature: cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L
    • History status: Exact match
    01
    259
    • IL_59027.1
    IL_59027.1
    • Basepair signature: cWW-L-R-L-cWW-L-L
    • History status: Exact match
    01
    260
    • IL_69091.1
    IL_69091.1
    • Basepair signature: cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
    • History status: Exact match
    01
    261
    • IL_96371.1
    IL_96371.1
    • Basepair signature: cWW-tHH-cWW
    • History status: Exact match
    01
    262
    • IL_13394.1
    IL_13394.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R
    • History status: Exact match
    01
    263
    • IL_34780.1
    IL_34780.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
    • History status: Exact match
  • Kink-turn (1)
  • 01
    264
    • IL_62947.1
    IL_62947.1
    • Basepair signature: cWW-cWW-cWW-R-cWW-R-cWW-R-cWW-R-L-tSH-L-L-L-L
    • History status: Exact match
    01
    265
    • IL_16665.1
    IL_16665.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-cWW
    • History status: Exact match
    01
    266
    • IL_84665.1
    IL_84665.1
    • Basepair signature: cWW-L-cSW-cWW-L-L-R-L-R-L-R-L
    • History status: Exact match
    01
    267
    • IL_19516.1
    IL_19516.1
    • Basepair signature: cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R
    • History status: Exact match
    01
    268
    • IL_52743.1
    IL_52743.1
    • Basepair signature: cWW-tSW-L-cSW-L-cWW-L
    • History status: Exact match
    01
    269
    • IL_97253.1
    IL_97253.1
    • Basepair signature: cWW-L-R-L-R-L-cWW-L-L-R-L
    • History status: Exact match
    01
    270
    • IL_54896.1
    IL_54896.1
    • Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R
    • History status: Exact match
    01
    271
    • IL_63033.1
    IL_63033.1
    • Basepair signature: cWW-cSH-L-R-L-cWW-L-R
    • History status: New id, 1 parent
    01
    272
    • IL_10092.1
    IL_10092.1
    • Basepair signature: cWW-tSH-tSH-L-R-cWW-L-R-cWW
    • History status: Exact match
    01
    273
    • IL_30441.1
    IL_30441.1
    • Basepair signature: cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R
    • History status: Exact match
    01
    274
    • IL_43140.1
    IL_43140.1
    • Basepair signature: cWW-L-cWW-cWH-L-L
    • History status: Exact match
    01
    275
    • IL_77827.1
    IL_77827.1
    • Basepair signature: cWW-tSS-R-L-L-R-L-cWW-tHH-L-R-L-R-L-R-L-R-L-R-L-cSH-R-R-L-R-L-R-cWW-R-cWW-R-L-R-L-R-L-R-R
    • History status: Exact match
    01
    276
    • IL_04105.1
    IL_04105.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R
    • History status: Exact match
    01
    277
    • IL_46112.1
    IL_46112.1
    • Basepair signature: cWW-L-cWW-L-L-R-L
    • History status: Exact match
    01
    278
    • IL_73662.1
    IL_73662.1
    • Basepair signature: cWW-L-cWW-L-L-R-L-R-L-R
    • History status: Exact match
    01
    279
    • IL_91920.1
    IL_91920.1
    • Basepair signature: cWW-cWW-tHH-cWW
    • History status: Exact match
    81
    280
    • IL_06300.1
    IL_06300.1
    • Basepair signature: cWW-L-R-L-R-L-cWW
    • History status: Exact match
    01
    281
    • IL_38882.1
    IL_38882.1
    • Basepair signature: cWW-L-R-tSS-R-L-tSH-R-L-cWW-R-L-R-L-cWW
    • History status: Exact match
    01
    282
    • IL_85222.1
    IL_85222.1
    • Basepair signature: cWW-L-R-L-R-L-cWW-L-L
    • History status: Exact match
    01
    283
    • IL_94165.1
    IL_94165.1
    • Basepair signature: cWW-L-R-L-tHS-cWW
    • History status: Exact match
    01
    284
    • IL_43166.1
    IL_43166.1
    • Basepair signature: cWW-L-R-L-cWW-L-L-R-L-R
    • History status: Exact match
    01
    285
    • IL_59724.1
    IL_59724.1
    • Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
    • History status: Exact match
  • 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge (1)
  • 01
    286
    • IL_22252.1
    IL_22252.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
    • History status: Exact match
    01
    287
    • IL_46461.1
    IL_46461.1
    • Basepair signature: cWW-L-tHH-L-tHS-L-cWW-L-L-L-L-R-L-R-tSW-R-R-L-R-L-R-L-R
    • History status: Exact match
    01
    288
    • IL_73759.1
    IL_73759.1
    • Basepair signature: cWW-cSH-tHS-cWH-cHW-cWW
    • History status: Exact match
    01
    289
    • IL_85630.1
    IL_85630.1
    • Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L-cWW-L
    • History status: Exact match
    01
    290
    • IL_94351.1
    IL_94351.1
    • Basepair signature: cWW-L-R-L-R-L-tHS-cWW
    • History status: Exact match
    01
    291
    • IL_19852.1
    IL_19852.1
    • Basepair signature: cWW-tWH-cWW-cWH-cWH-cWH
    • History status: Exact match
    01
    292
    • IL_89055.1
    IL_89055.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-cWW-L-cWW-L-L
    • History status: Exact match
    01
    293
    • IL_15484.1
    IL_15484.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-cSH
    • History status: Exact match
    01
    294
    • IL_22436.1
    IL_22436.1
    • Basepair signature: cWW-L-tWH-tHW-cWW-cWW
    • History status: Exact match
  • Kink-turn related (1)
  • 01
    295
    • IL_17765.1
    IL_17765.1
    • Basepair signature: cWW-tWH-cHW-L-tSS-cSS-cWW-R-L
    • History status: Exact match
    01
    296
    • IL_38969.1
    IL_38969.1
    • Basepair signature: cWW-L-R-L-cWW-L-L
    • History status: Exact match
    01
    297
    • IL_85652.1
    IL_85652.1
    • Basepair signature: cWW-tSH-L-R-L-R-L-cWW-L
    • History status: Exact match
    01
    298
    • IL_00559.1
    IL_00559.1
    • Basepair signature: cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L
    • History status: Exact match
    01
    299
    • IL_31504.1
    IL_31504.1
    • Basepair signature: cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
    • History status: Exact match
    01
    300
    • IL_44325.1
    IL_44325.1
    • Basepair signature: cWW-cWH-cWW-L
    • History status: Exact match
    01
    301
    • IL_70096.1
    IL_70096.1
    • Basepair signature: cWW-L-cWW-cWW
    • History status: Exact match
    01
    302
    • IL_80412.1
    IL_80412.1
    • Basepair signature: cWW-tSW-L-cWW-L-L-R-L
    • History status: Exact match
    01
    303
    • IL_22821.1
    IL_22821.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L
    • History status: Exact match
  • Pseudoknot (1)
  • 01
    304
    • IL_93094.1
    IL_93094.1
    • Basepair signature: cWW-L-tHH-L-tHS-L-cWW
    • History status: Exact match
  • Reverse kink-turn (1)
  • 01
    305
    • IL_39287.1
    IL_39287.1
    • Basepair signature: cWW-L-R-L-tSH-tSS-L-tHS-cWW-L-L
    • History status: Exact match
    01
    306
    • IL_10810.1
    IL_10810.1
    • Basepair signature: cWW-L-cWS-cSH-cWW
    • History status: Exact match
    01
    307
    • IL_31890.1
    IL_31890.1
    • Basepair signature: cWW-L-R-L-R-L-R-L
    • History status: Exact match
    01
    308
    • IL_61242.1
    IL_61242.1
    • Basepair signature: cWW-cWW-L-R-L-R-cWW
    • History status: Exact match
    01
    309
    • IL_70149.1
    IL_70149.1
    • Basepair signature: cWW-L-R-cWW
    • History status: Exact match
    01
    310
    • IL_90346.1
    IL_90346.1
    • Basepair signature: cWW-L-R-L-cWW-L-L
    • History status: Exact match
    01
    311
    • IL_15978.1
    IL_15978.1
    • Basepair signature: cWW-tSH-L-cWS-cWW-L
    • History status: Exact match
    101
    312
    • IL_23152.1
    IL_23152.1
    • Basepair signature: cWW-L-cWW-L-L-R-L-R-L
    • History status: Exact match
    01
    313
    • IL_37629.1
    IL_37629.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
  • Stack outside cWW (1)
  • 51
    314
    • IL_51101.1
    IL_51101.1
    • Basepair signature: cWW-L-cWW
    • History status: Exact match
    01
    315
    • IL_95811.1
    IL_95811.1
    • Basepair signature: cWW-L-cWW-L-cWW-L-R-L
    • History status: Exact match
  • Vitamin B12 Aptamer (1)
  • 01
    316
    • IL_01393.1
    IL_01393.1
    • Basepair signature: cWW-L-cWW-L-L
    • History status: Exact match
    01
    317
    • IL_20245.1
    IL_20245.1
    • Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L
    • History status: Exact match
    211
    318
    • IL_33557.1
    IL_33557.1
    • Basepair signature: cWW-tHH-R-L-R-L-L-R-L-R-cWW
    • History status: Exact match
    01
    319
    • IL_53601.1
    IL_53601.1
    • Basepair signature: cWW-tHW-tHS-cWW-cWW
    • History status: Exact match
    101
    320
    • IL_90348.1
    IL_90348.1
    • Basepair signature: cWW-cSW-L-cWW-L
    • History status: Exact match
    71

    Coloring options:


    Exact match 299; Updated, 2 parents 2; Updated, 1 parent 11; New id, > 2 parents 3; New id, 2 parents 2; New id, 1 parent 3;

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