Motif IL_11289.1 Version IL_11289.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6		7	1-7	2-5	2-6	3-4
1	IL_3J7P_174➜	3J7P	0.4138	2		S2	SSU rRNA	G	411	G	412	G	413	*	C	424	G	425	U	427	C	429	cWW			cWW
2	IL_5A2Q_023➜	5A2Q	0.4027	2		2	SSU rRNA	G	411	G	412	G	413	*	C	424	G	425	U	427	C	429	cWW	ntHS		cWW
3	IL_3J7A_018➜	3J7A	0.1334	2		A	SSU rRNA	G	369	G	370	G	371	*	C	382	G	383	U	385	C	387	cWW	ntHS		cWW
4	IL_3JAM_022➜	3JAM	0.0000	2		2	SSU rRNA	G	362	G	363	G	364	*	C	375	G	376	U	378	C	380	cWW			cWW
5	IL_4V88_404➜	4V88	0.0894	2		A6	SSU rRNA	G	363	G	364	G	365	*	C	376	G	377	U	379	C	381	cWW	ntHS		cWW
6	IL_4BTS_281➜	4BTS	0.1542	2		DA	SSU rRNA	G	354	A	355	G	356	*	C	367	G	368	U	370	C	372	cWW	ntHS		cWW
7	IL_1FJG_063➜	1FJG	0.7930	2		A	SSU rRNA	C	1459	A	1460	G	1461	*	C	1440	G	1441	A	1446	G	1447	cWW	tHS		cWW
8	IL_4V19_052➜	4V19	0.8357	1		A	LSU rRNA	C	1342	A	1343	A	1344	*	U	1361	A	1362	A	1364	G	1365	cWW		ncWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGG*CGAUUC	5
CAA*UAAAG	1
GAG*CGAUUC	1
CAG*CGGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*GAUU	5
A*AAA	1
A*GAUU	1
A*GGGA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations
Basepair signature: cWW-R-tHS-cWW
Heat map statistics: Min 0.09 | Avg 0.47 | Max 0.91

Help

Coloring options: Nucleotide numbers

Copyright 2024 BGSU RNA group. Page generated in 0.5005 s