Motif IL_19719.1 Version IL_19719.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 2-12 | 3-10 | 4-9 | 5-8 | 6-7 | 8-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V8P | 0.5531 | 0 | F1 | LSU rRNA | C | 781 | U | 782 | U | 783 | G | 784 | A | 785 | G | 786 | * | C | 794 | G | 795 | A | 796 | A | 797 | G | 798 | G | 799 | cWW | ncSW | tSH | tHS | cWW | ncSH | |||
| 2 | ➜ | 4GMA | 0.0000 | 0 | Z | Adenosylcobalamin riboswitch | G | 138 | U | 139 | G | 140 | G | 141 | A | 142 | G | 143 | * | C | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | cWW | ncWW | ncWW | ntSH | tSH | tHS | cWW | ||
| 3 | ➜ | 4IOA | 0.4256 | 0 | X | LSU rRNA | G | 736 | C | 737 | G | 738 | G | 739 | A | 740 | G | 741 | * | U | 716 | G | 717 | A | 718 | A | 719 | A | 720 | C | 721 | cWW | tSH | tSH | tHS | cWW | ||||
| 4 | ➜ | 1FJG | 0.8717 | 2 | A | SSU rRNA | G | 628 | G | 629 | G | 630 | G | 631 | A | 632 | G | 633 | * | U | 605 | G | 606 | A | 609 | G | 610 | A | 611 | C | 612 | cWW | ncWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGGAG*UGAAAGAC | 1 |
| GCGGAG*UGAAAC | 1 |
| GUGGAG*CGAAGC | 1 |
| CUUGAG*CGAAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGA*GAAAGA | 1 |
| CGGA*GAAA | 1 |
| UGGA*GAAG | 1 |
| UUGA*GAAG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW
- Heat map statistics
- Min 0.43 | Avg 0.57 | Max 0.97
Coloring options: