Description:
Triple Sheared (tSH-tHS-tHS) with wobble cWW.
Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW
Free text annotation:
More than one group. Poor modeling in some. Three from SSU one from Cobalamin riboswitch.
Intraclusteral linkage
Min 0.43 | Avg 0.57 | Max 0.97
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5 6break 7 8 9 10 11 121-122-112-123-104-95-75-86-7
124GMA0.00000G138U139G140G141A142G143*C97G98A99A100G101C102cWWncWWncSWntSHtSHtHScWW
234IOA0.42560G736C737G738G739A740G741*U716G717A718A719A720C721cWWtSHtSHtHScWW
314V8P0.55310C781U782U783G784A785G786*C794G795A796A797G798G799cWWncSWncSWtSHntHWtHScWW
441FJG0.87172G628G629G630G631A632G633*U605G606A609G610A611C612cWWncWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGGGAG*UGAAAGAC1
CUUGAG*CGAAGG1
GCGGAG*UGAAAC1
GUGGAG*CGAAGC1
Non-Watson-Crick part of the motif
SequenceCounts
GGGA*GAAAGA1
UUGA*GAAG1
CGGA*GAAA1
UGGA*GAAG1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Mutual discrepancy heat map legend: