Motif IL_22201.1 Version IL_22201.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-15 | 3-14 | 3-15 | 9-10 | 9-11 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3JAM | 0.2518 | 1 | 2 | SSU rRNA | G | 751 | A | 752 | A | 753 | A | 754 | A | 755 | A | 756 | A | 757 | U | 758 | U | 759 | * | A | 790 | U | 791 | A | 792 | U | 794 | A | 795 | G | 796 | C | 797 | cWW | ncWW | ncWW | cWW | ncWW | ||
| 2 | ➜ | 5A2Q | 0.0000 | 1 | 2 | SSU rRNA | G | 807 | A | 808 | A | 809 | A | 810 | A | 811 | A | 812 | A | 813 | U | 814 | U | 815 | * | A | 849 | C | 850 | C | 851 | C | 853 | A | 854 | G | 855 | C | 856 | cWW | cWW | ncSW | cWW | |||
| 3 | ➜ | 4V88 | 0.2339 | 1 | A6 | SSU rRNA | G | 751 | A | 752 | A | 753 | A | 754 | A | 755 | A | 756 | A | 757 | U | 758 | U | 759 | * | A | 791 | U | 792 | A | 793 | U | 795 | A | 796 | G | 797 | C | 798 | cWW | cWW | ncWW | ncWW | cWW | ||
| 4 | ➜ | 4BTS | 0.2798 | 1 | DA | SSU rRNA | G | 735 | A | 736 | A | 737 | A | 738 | A | 739 | A | 740 | A | 741 | U | 742 | U | 743 | * | A | 774 | C | 775 | A | 776 | U | 778 | A | 779 | G | 780 | C | 781 | cWW | cWW | cWW | ||||
| 5 | ➜ | 3J7A | 0.3343 | 1 | A | SSU rRNA | G | 801 | A | 802 | G | 803 | U | 804 | A | 805 | A | 806 | A | 807 | U | 808 | U | 809 | * | A | 854 | C | 855 | U | 856 | A | 857 | A | 859 | G | 860 | C | 861 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAAAAUU*AUAUUAGC | 2 |
| GAGUAAAUU*ACUAUAGC | 1 |
| GAAAAAAUU*ACCGCAGC | 1 |
| GAAAAAAUU*ACAUUAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAAAAU*UAUUAG | 2 |
| AGUAAAU*CUAUAG | 1 |
| AAAAAAU*CCGCAG | 1 |
| AAAAAAU*CAUUAG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
- Heat map statistics
- Min 0.23 | Avg 0.26 | Max 0.44
Coloring options: