Motif IL_30484.1 Version IL_30484.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-6 | 1-7 | 2-5 | 2-6 | 2-7 | 3-4 | 3-5 | 3-6 | 4-5 | 4-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V8P | 0.5754 | 0 | F1 | LSU rRNA | G | 2386 | C | 2387 | G | 2388 | G | 2389 | * | U | 2974 | A | 2975 | C | 2976 | cWW | ncWW | ncWW | cSH | cWW | ||||||
| 2 | ➜ | 4V88 | 0.5455 | 0 | A5 | LSU rRNA | G | 2391 | C | 2392 | G | 2393 | G | 2394 | * | U | 2986 | A | 2987 | C | 2988 | cWW | cWW | cSH | cWW | |||||||
| 3 | ➜ | 4V91 | 0.5934 | 0 | 1 | LSU rRNA | G | 2391 | C | 2392 | G | 2393 | G | 2394 | * | U | 2986 | A | 2987 | C | 2988 | cWW | cWW | cSH | cWW | |||||||
| 4 | ➜ | 5AN9 | 0.5405 | 0 | N | LSU rRNA | G | 2657 | C | 2658 | G | 2659 | G | 2660 | * | U | 3319 | A | 3320 | C | 3321 | cWW | ncWW | ncWW | cSH | cWW | ||||||
| 5 | ➜ | 4V91 | 0.5085 | 1 | 1 | LSU rRNA | G | 237 | A | 238 | G | 239 | G | 241 | * | U | 177 | U | 178 | C | 179 | cWW | ncWW | ncSH | cWW | |||||||
| 6 | ➜ | 4V8P | 0.4716 | 1 | F1 | LSU rRNA | G | 2201 | A | 2202 | A | 2203 | G | 2205 | * | C | 2230 | G | 2231 | C | 2232 | cWW | cWW | cSH | cWW | |||||||
| 7 | ➜ | 3J7P | 0.3178 | 0 | 5 | LSU rRNA | A | 4723 | A | 4724 | C | 4725 | G | 4726 | * | U | 4577 | G | 4578 | U | 4579 | cWW | cWW | ncWH | cWW | |||||||
| 8 | ➜ | 3J7P | 0.0000 | 1 | 5 | LSU rRNA | G | 4347 | A | 4348 | C | 4350 | U | 4351 | * | A | 4363 | G | 4364 | C | 4365 | cWW | cWW | ncWW | cWW | |||||||
| 9 | ➜ | 4V91 | 0.3498 | 0 | 1 | LSU rRNA | G | 1618 | A | 1619 | U | 1620 | A | 1621 | * | U | 1824 | G | 1825 | C | 1826 | cWW | ncWW | ncSW | cWW | |||||||
| 10 | ➜ | 4IOA | 0.3739 | 1 | X | LSU rRNA | G | 1503 | G | 1504 | U | 1505 | A | 1507 | * | U | 1515 | A | 1516 | C | 1517 | cWW | cWW | ncWH | cWW | |||||||
| 11 | ➜ | 3J9W | 0.4495 | 0 | AA | SSU rRNA | G | 755 | U | 756 | A | 757 | A | 758 | * | U | 666 | G | 667 | C | 668 | cWW | ncWW | ncSW | cWW | |||||||
| 12 | ➜ | 3J7P | 0.6528 | 0 | S2 | SSU rRNA | A | 554 | A | 555 | U | 556 | U | 557 | * | A | 528 | A | 529 | U | 530 | ncWW | cWW | ncWW | ncWW | ncSH | cWW | |||||
| 13 | ➜ | 4PMI | 0.6712 | 1 | A | Rev-Response-Element RNA | U | 41||||18_445 | A | 42||||18_445 | A | 44||||18_445 | U | 45||||18_445 | * | A | 75||||18_445 | G | 76||||18_445 | G | 77||||18_445 | cWW | ntHH | cWW | cWW | |||||||
| 14 | ➜ | 4PMI | 0.6712 | 1 | A | Rev-Response-Element RNA | U | 41||||24_444 | A | 42||||24_444 | A | 44||||24_444 | U | 45||||24_444 | * | A | 75||||24_444 | G | 76||||24_444 | G | 77||||24_444 | cWW | ntHH | cWW | cWW | |||||||
| 15 | ➜ | 4PMI | 0.6712 | 1 | A | Rev-Response-Element RNA | U | 41||||13_455 | A | 42||||13_455 | A | 44||||13_455 | U | 45||||13_455 | * | A | 75||||13_455 | G | 76||||13_455 | G | 77||||13_455 | cWW | ntHH | cWW | cWW | |||||||
| 16 | ➜ | 4PMI | 0.6712 | 1 | A | Rev-Response-Element RNA | U | 41||||6_445 | A | 42||||6_445 | A | 44||||6_445 | U | 45||||6_445 | * | A | 75||||6_445 | G | 76||||6_445 | G | 77||||6_445 | cWW | ntHH | cWW | cWW | |||||||
| 17 | ➜ | 4PMI | 0.6712 | 1 | A | Rev-Response-Element RNA | U | 41||||12_455 | A | 42||||12_455 | A | 44||||12_455 | U | 45||||12_455 | * | A | 75||||12_455 | G | 76||||12_455 | G | 77||||12_455 | cWW | ntHH | cWW | cWW | |||||||
| 18 | ➜ | 4PMI | 0.6712 | 1 | A | Rev-Response-Element RNA | U | 41 | A | 42 | A | 44 | U | 45 | * | A | 75 | G | 76 | G | 77 | cWW | ntHH | cWW | cWW | |||||||
| 19 | ➜ | 4PHY | 0.6860 | 1 | A+B | RNA (26-MER) + RNA (20-mer) | G | 17 | A | 18 | U | 19 | C | 20 | * | G | 31 | A | 33 | C | 34 | cWW | cWW | cWW | ||||||||
| 20 | ➜ | 5AJ0 | 0.4727 | 0 | A2 | LSU rRNA | C | 4701 | G | 4702 | C | 4703 | G | 4704 | * | C | 4916 | U | 4917 | G | 4918 | cWW | ncWS | cWW | cWW | |||||||
| 21 | ➜ | 5AJ0 | 0.4070 | 0 | A2 | LSU rRNA | G | 733 | G | 734 | G | 735 | G | 736 | * | C | 907 | C | 908 | C | 909 | cWW | ncWW | ncWW | cWW | |||||||
| 22 | ➜ | 3J7Y | 0.3744 | 0 | A | LSU rRNA | A | 2091 | C | 2092 | U | 2093 | G | 2094 | * | C | 2046 | U | 2047 | U | 2048 | cWW | ncWW | ncWW | cWW | |||||||
| 23 | ➜ | 3J9W | 0.4249 | 0 | BA | LSU rRNA | A | 970 | A | 971 | U | 972 | G | 973 | * | C | 899 | U | 900 | U | 901 | cWW | ncWW | ncWW | cWW | |||||||
| 24 | ➜ | 1X8W | 0.4832 | 0 | A | Tetrahymena ribozyme RNA | G | 331 | U | 403 | U | 404 | G | 405 | * | C | 316 | U | 317 | C | 318 | cWW | ntHW | cWW | ||||||||
| 25 | ➜ | 3J7Y | 0.4454 | 0 | A | LSU rRNA | U | 1876 | U | 1877 | U | 1878 | G | 1879 | * | C | 1895 | U | 1896 | A | 1897 | cWW | ncWW | ncWW | cWW | |||||||
| 26 | ➜ | 3J79 | 0.3937 | 1 | A | LSU rRNA | U | 3109 | A | 3110 | U | 3112 | U | 3113 | * | A | 3145 | U | 3146 | A | 3147 | cWW | ncWW | ncWW | cWW | |||||||
| 27 | ➜ | 4V9F | 0.4344 | 0 | 0 | LSU rRNA | G | 1475 | A | 1476 | C | 1477 | U | 1478 | * | A | 1465 | C | 1466 | C | 1467 | cWW | cWW | |||||||||
| 28 | ➜ | 4P3T | 0.4204 | 0 | B+A | RNA (23-mer) | G | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | C | 8 | C | 9 | cWW | cWW | |||||||||
| 29 | ➜ | 3J7P | 0.3994 | 0 | 5 | LSU rRNA | G | 4095 | C | 4096 | G | 4097 | A | 4098 | * | U | 4111 | C | 4112 | U | 4113 | ncWW | cWW | ncWW | cWW | |||||||
| 30 | ➜ | 3J9W | 0.7204 | 0 | BA | LSU rRNA | G | 946 | A | 947 | A | 948 | U | 949 | * | A | 922 | C | 923 | U | 924 | cWW | ntHS | ncHS | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUAU*AGG | 6 |
| GCGG*UAC | 4 |
| GUUG*CUC | 1 |
| AAUG*CUU | 1 |
| ACUG*CUU | 1 |
| UUUG*CUA | 1 |
| UAUUU*AUA | 1 |
| GAAU*ACU | 1 |
| GCGA*UCU | 1 |
| GAAG*CCC | 1 |
| GACU*ACC | 1 |
| GGGG*CCC | 1 |
| GAUC*GAAC | 1 |
| AACG*UGU | 1 |
| GAAUG*CGC | 1 |
| GAGUG*UUC | 1 |
| GACCU*AGC | 1 |
| GAUA*UGC | 1 |
| AAUU*AAU | 1 |
| GUAA*UGC | 1 |
| GGUCA*UAC | 1 |
| CGCG*CUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA*G | 6 |
| CG*A | 4 |
| UU*U | 2 |
| AA*C | 2 |
| GG*C | 1 |
| CU*U | 1 |
| AU*U | 1 |
| AUU*U | 1 |
| CG*C | 1 |
| AC*C | 1 |
| GC*U | 1 |
| AU*AA | 1 |
| ACC*G | 1 |
| AC*G | 1 |
| AAU*G | 1 |
| AU*G | 1 |
| GUC*A | 1 |
| AU*A | 1 |
| UA*G | 1 |
| AGU*U | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-L-cWW
- Heat map statistics
- Min 0.09 | Avg 0.62 | Max 0.99
Coloring options: