Motif IL_35536.1 Version IL_35536.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-13 | 3-14 | 4-12 | 5-6 | 6-11 | 7-10 | 8-9 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V88 | 0.0000 | A5 | LSU rRNA | C | 82 | U | 83 | U | 84 | A | 85 | G | 86 | U | 87 | A | 88 | A | 89 | * | U | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | G | 103 | cWW | ntSH | tSW | tHH | cSH | tWH | tHS | cWW | ||
| 2 | ➜ | 4V91 | 0.0965 | 1 | LSU rRNA | C | 82 | U | 83 | U | 84 | A | 85 | G | 86 | U | 87 | A | 88 | A | 89 | * | U | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | G | 103 | cWW | ntSH | tSW | ntSH | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGUAA*UGAAGCG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGUA*GAAGC | 2 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tSH-tSW-tHH-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.05 | Max 0.10
Coloring options: