Motif IL_40006.1 Version IL_40006.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-15 | 3-14 | 3-15 | 4-11 | 4-12 | 4-13 | 5-11 | 5-12 | 5-13 | 6-10 | 6-11 | 7-10 | 8-9 | 13-14 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V91 | 0.0829 | 1 | 1 | LSU rRNA | C | 31 | U | 32 | G | 33 | A | 34 | A | 35 | C | 36 | U | 37 | U | 38 | * | A | 45 | U | 46 | C | 47 | A | 48 | U | 50 | A | 51 | A | 52 | G | 53 | cWW | tSH | tSH | tHW | tHH | tHS | cWW | cWW | ||||||||
| 2 | ➜ | 4V88 | 0.0000 | 1 | A5 | LSU rRNA | C | 31 | U | 32 | G | 33 | A | 34 | A | 35 | C | 36 | U | 37 | U | 38 | * | A | 45 | U | 46 | C | 47 | A | 48 | U | 50 | A | 51 | A | 52 | G | 53 | cWW | ntSH | tSH | tHW | tHH | tHS | cWW | cWW | ||||||||
| 3 | ➜ | 3J79 | 0.0946 | 1 | A | LSU rRNA | C | 31 | C | 32 | G | 33 | A | 34 | A | 35 | U | 36 | U | 37 | U | 38 | * | A | 45 | U | 46 | A | 47 | A | 48 | U | 50 | A | 51 | A | 52 | G | 53 | cWW | tSH | tHW | tHH | cWW | cWW | ||||||||||
| 4 | ➜ | 3JAM | 0.7186 | 0 | 2 | SSU rRNA | G | 676 | G | 677 | U | 678 | U | 679 | U | 680 | U | 681 | U | 682 | C | 683 | * | G | 650 | U | 651 | C | 652 | C | 653 | G | 654 | G | 655 | U | 656 | C | 657 | cWW | ncWS | cWS | ncWW | ncWW | ncWW | ncWW | ncWW | ncWS | ncWW | cWW | ncSH | ||||
| 5 | ➜ | 3JAN | 0.7409 | 1 | 4 | SRP RNA | G | 227 | A | 228 | U | 229 | C | 230||A | A | 231||A | U | 233||A | A | 234 | G | 235 | * | C | 116 | U | 117 | A | 118||A | A | 119||A | G | 120 | U | 121 | U | 122 | C | 123 | cWW | ncWW | ncWW | ncWW | ntWW | ntWW | ncWW | ncWW | cWW | |||||||
| 6 | ➜ | 5AJ3 | 0.7782 | 0 | A | SSU rRNA | A | 360 | A | 361 | A | 362 | A | 363 | U | 364 | A | 365 | A | 366 | A | 367 | * | U | 327 | A | 328 | A | 329 | A | 330 | U | 331 | U | 332 | A | 333 | U | 334 | cWW | tSH | ntHW | ntHS | ncWW | ncWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAACUU*AUCAAUAAG | 2 |
| AAAAUAAA*UAAAUUAU | 1 |
| GAUCAGUAG*CUAAGUUC | 1 |
| GGUUUUUC*GUCCGGUC | 1 |
| CCGAAUUU*AUAAUUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAACU*UCAAUAA | 2 |
| AAAUAA*AAAUUA | 1 |
| AUCAGUA*UAAGUU | 1 |
| GUUUUU*UCCGGU | 1 |
| CGAAUU*UAAUUAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-L-R-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.51 | Max 0.80
Coloring options: