IL_47827.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-2	1-5	2-5	3-4
1	IL_5FDU_032	5FDU	0.6982	0	Minor groove platform (H)	1A	LSU rRNA	U	924	A	925	G	926	*	C	944	A	945		cWW		cWW
2	IL_3J9W_096	3J9W	0.6941	0	Minor groove platform (H)	BA	LSU rRNA	U	924	A	925	G	926	*	C	945	G	946		ncWW		cWW
3	IL_3JAM_066	3JAM	0.6782	0		2	SSU rRNA	C	1305	U	1306	G	1307	*	C	1316	G	1317	ncSW	cWW		cWW
4	IL_3J7A_060	3J7A	0.6245	0	Minor groove platform (H)	A	SSU rRNA	C	1408	U	1409	G	1410	*	C	1419	G	1420		cWW		cWW
5	IL_3J7P_210	3J7P	0.6680	0		S2	SSU rRNA	C	1521	A	1522	C	1523	*	G	1235	G	1236		cWW		cWW
6	IL_4V88_445	4V88	0.5902	0	Minor groove platform	A6	SSU rRNA	C	1459	A	1460	C	1461	*	G	1178	G	1179		cWW		cWW
7	IL_3JAM_056	3JAM	0.6151	0	Minor groove platform (H)	2	SSU rRNA	C	1457	A	1458	C	1459	*	G	1177	G	1178		cWW		cWW
8	IL_3J7A_055	3J7A	0.5887	0	Minor groove platform (H)	A	SSU rRNA	C	1705	A	1706	C	1707	*	G	1279	G	1280		cWW		cWW
9	IL_4V9F_032	4V9F	0.7104	0	Single bulged A	0	LSU rRNA	U	942	A	943	G	944	*	C	1023	G	1024		cWW		cWW
10	IL_4R4V_001	4R4V	0.5314	0	Minor groove platform	A	VS ribozyme RNA	U	777	U	778	A	779	*	U	607	G	608		cWW		cWW
11	IL_4R4V_007	4R4V	0.5314	0	Minor groove platform	A	VS ribozyme RNA	U	777\|\|\|\|7_556	U	778\|\|\|\|7_556	A	779\|\|\|\|7_556	*	U	607\|\|\|\|7_556	G	608\|\|\|\|7_556		cWW		cWW
12	IL_5AJ0_174	5AJ0	0.4749	0		A2	LSU rRNA	G	4857	C	4858	G	4859	*	C	4878	C	4879	ncSH	cWW		cWW
13	IL_3J7P_038	3J7P	0.4203	0		5	LSU rRNA	G	1217	G	1218	G	1219	*	C	1081	C	1082	ncSH	cWW		cWW
14	IL_4V4Q_212	4V4Q	0.3863	0	Single stack bend (H)	CA	SSU rRNA	A	746	A	747	G	748	*	C	658	U	659		cWW		cWW
15	IL_5AJ0_135	5AJ0	0.2747	0		A2	LSU rRNA	U	4033	C	4034	G	4035	*	C	3919	A	3920	ncSH	cWW		cWW
16	IL_5A2Q_055	5A2Q	0.2537	0		2	SSU rRNA	G	1108	C	1109	G	1110	*	C	1123	C	1124		cWW	ntHS	cWW
17	IL_3J7P_057	3J7P	0.0000	0		5	LSU rRNA	U	1790	U	1791	U	1792	*	A	1737	A	1738	cSH	ncWW	ntHS	cWW
18	IL_4V88_282	4V88	0.1764	0	Minor groove platform (H)	A5	LSU rRNA	U	1050	U	1051	U	1052	*	A	997	A	998		cWW	tHS	cWW
19	IL_5AJ0_072	5AJ0	0.1689	0	Minor groove platform (H)	A2	LSU rRNA	U	1772	U	1773	U	1774	*	A	1719	A	1720	ncSH	cWW	tHS	cWW
20	IL_4V91_043	4V91	0.1819	0	Minor groove platform (H)	1	LSU rRNA	U	1050	U	1051	U	1052	*	A	997	A	998		cWW	ntHS	cWW
21	IL_4V88_412	4V88	0.1798	0	Minor groove platform	A6	SSU rRNA	A	518	C	519	A	520	*	U	532	U	533		cWW	ntHS	cWW
22	IL_5AJ3_005	5AJ3	0.2139	0		A	SSU rRNA	G	103	A	104	G	105	*	C	78	C	79	ncSH	cWW	ntHS	cWW
23	IL_1Y0Q_003	1Y0Q	0.2389	0	Minor groove platform	A	Group I catalytic intron	A	120	C	121	G	122	*	C	192	U	193		cWW	ntHS	cWW
24	IL_3J9W_093	3J9W	0.2402	0	Minor groove platform (H)	BA	LSU rRNA	U	960	C	961	C	962	*	G	909	A	910	ncSH	cWW		cWW
25	IL_4V9F_034	4V9F	0.1827	0	Minor groove platform	0	LSU rRNA	U	1009	C	1010	C	1011	*	G	956	A	957	cSH	cWW		cWW
26	IL_5FDU_028	5FDU	0.1778	0		1A	LSU rRNA	U	959	C	960	C	961	*	G	909	A	910	cSH	cWW		cWW
27	IL_4IOA_027	4IOA	0.2495	0	Minor groove platform	X	LSU rRNA	U	925	C	926	C	927	*	G	875	A	876	cSH	cWW		cWW
28	IL_4V91_101	4V91	0.3200	1	Minor groove platform (H)	1	LSU rRNA	U	2807	C	2809	C	2810	*	G	2412	A	2413	ncSH	cWW		cWW
29	IL_4V19_039	4V19	0.3077	1	Minor groove platform (H)	A	LSU rRNA	U	1259	C	1261	C	1262	*	G	1063	A	1064	cSH	cWW		cWW
30	IL_5AJ0_132	5AJ0	0.3471	1	Minor groove platform (H)	A2	LSU rRNA	U	4346	C	4348	C	4349	*	G	3887	A	3888	cSH	cWW		cWW
31	IL_4V8P_398	4V8P	0.3326	1	Minor groove platform (H)	F1	LSU rRNA	U	2795	C	2797	C	2798	*	G	2407	A	2408	cSH	cWW		cWW
32	IL_4V88_340	4V88	0.3368	1	Minor groove platform (H)	A5	LSU rRNA	U	2807	C	2809	C	2810	*	G	2412	A	2413	cSH	cWW		cWW
33	IL_4IOA_076	4IOA	0.3184	1	Minor groove platform	X	LSU rRNA	U	2417	C	2419	C	2420	*	G	2053	A	2054	cSH	cWW		cWW
34	IL_5AN9_026	5AN9	0.3409	1	Minor groove platform (H)	N	LSU rRNA	U	3140	C	3142	C	3143	*	G	2678	A	2679	cSH	cWW		cWW
35	IL_3J79_091	3J79	0.2988	1	Minor groove platform (H)	A	LSU rRNA	U	3166	C	3168	C	3169	*	G	2705	A	2706	cSH	cWW		cWW
36	IL_5J7L_324	5J7L	0.2934	1	Minor groove platform	DA	LSU rRNA	U	2438	C	2440	U	2441	*	A	2070	A	2071	cSH	cWW		cWW
37	IL_4V9F_075	4V9F	0.3030	1	Minor groove platform	0	LSU rRNA	U	2473	C	2475	C	2476	*	G	2111	A	2112	cSH	cWW		cWW
38	IL_5FDU_082	5FDU	0.2894	1	Minor groove platform (H)	1A	LSU rRNA	U	2450	C	2452	C	2453	*	G	2092	A	2093	cSH	cWW		cWW
39	IL_3J7Y_041	3J7Y	0.3142	1	Minor groove platform (H)	A	LSU rRNA	U	2925	C	2927	C	2928	*	G	2733	A	2734	cSH	cWW		cWW
40	IL_3J7P_108	3J7P	0.3586	1	Minor groove platform (H)	5	LSU rRNA	U	4384	C	4386	C	4387	*	G	3916	A	3917	cSH	cWW		cWW
41	IL_3J9W_149	3J9W	0.3508	1	Minor groove platform (H)	BA	LSU rRNA	U	2467	C	2469	C	2470	*	G	2099	A	2100	ncSH	cWW		cWW
42	IL_5AJ3_027	5AJ3	0.2991	0	Minor groove platform (H)	A	SSU rRNA	G	710	A	711	A	712	*	U	559	C	560	cSH	cWW	tHS	cWW
43	IL_1U6B_007	1U6B	0.2934	0	Minor groove platform	B	197-MER	G	128	A	129	G	130	*	C	177	C	178	cSH	cWW	tHS	cWW
44	IL_3J9W_037	3J9W	0.3605	0	Minor groove platform (H)	AA	SSU rRNA	C	1235	A	1236	C	1237	*	G	963	G	964		cWW	ntHS	cWW
45	IL_3J79_040	3J79	0.2438	0	Minor groove platform (H)	A	LSU rRNA	U	1173	C	1174	C	1175	*	G	1119	A	1120		cWW	ntHS	cWW
46	IL_1FJG_038	1FJG	0.2909	0	Minor groove platform (H)	A	SSU rRNA	C	1226	A	1227	C	1228	*	G	953	G	954		cWW	ntHS	cWW
47	IL_4BTS_319	4BTS	0.3433	0	Minor groove platform (H)	DA	SSU rRNA	C	1430	A	1431	C	1432	*	G	1150	G	1151		cWW	ntHS	cWW
48	IL_4V4Q_222	4V4Q	0.3796	0	Minor groove platform (H)	CA	SSU rRNA	C	1226	A	1227	C	1228	*	G	953	G	954		cWW	ntHS	cWW
49	IL_5A2Q_061	5A2Q	0.4413	0	Minor groove platform (H)	2	SSU rRNA	C	1521	A	1522	C	1523	*	G	1235	G	1236		cWW		cWW
50	IL_3IWN_001	3IWN	0.5262	0	Minor groove platform	A	Cyclic di-GMP-I riboswitch	G	89	A	90	U	91	*	A	2	C	3		ncWW		cWW
51	IL_3J9W_118	3J9W	0.4588	0		BA	LSU rRNA	U	1448	C	1449	C	1450	*	G	1637	A	1638	ncSH	cWW		cWW
52	IL_3K0J_002	3K0J	0.4555	0	Minor groove platform related	E	TPP riboswitch (THI element)	C	18	C	19	U	20	*	A	35	G	36	ncSH	cWW		cWW
53	IL_2GDI_007	2GDI	0.4161	0		Y	TPP riboswitch (THI element)	C	23	C	24	U	25	*	A	35	G	36	ncSH	cWW		cWW
54	IL_4V8P_430	4V8P	0.3949	0		F1	LSU rRNA	U	3338	C	3339	U	3340	*	A	3281	A	3282		cWW		cWW
55	IL_5J7L_247	5J7L	0.2441	0	Minor groove platform	DA	LSU rRNA	U	434	C	435	C	436	*	G	43	A	44	cSH	cWW		cWW
56	IL_5FDU_003	5FDU	0.3425	0	Minor groove platform (H)	1A	LSU rRNA	U	461	C	462	C	463	*	G	42	A	43	cSH	cWW		cWW
57	IL_4IOA_003	4IOA	0.3391	0	Minor groove platform	X	LSU rRNA	U	447	C	448	C	449	*	G	42	A	43	cSH	cWW		cWW
58	IL_3RW6_001	3RW6	0.4498	1	Minor groove platform	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	U	53	A	55	U	56	*	A	7	A	8	ncSH	cWW		cWW
59	IL_4V91_091	4V91	0.6379	1	Major groove intercalation (H)	1	LSU rRNA	C	2196	A	2198	G	2199	*	C	2245	G	2246		cWW		cWW
60	IL_3J79_082	3J79	0.6361	1	Major groove intercalation (H)	A	LSU rRNA	C	2489	A	2491	G	2492	*	C	2538	G	2539		cWW		cWW
61	IL_5AJ0_122	5AJ0	0.6036	1	Major groove intercalation (H)	A2	LSU rRNA	C	3671	A	3673	G	3674	*	C	3720	G	3721		cWW		cWW
62	IL_3J9W_138	3J9W	0.6248	1	Minor groove platform, major groove intercalation (H)	BA	LSU rRNA	C	1866	G	1868	G	1869	*	C	1931	G	1932		cWW	ntHS	cWW
63	IL_3J7P_014	3J7P	0.5155	1		5+8	LSU rRNA + 5.8S rRNA	C	339	G	341	G	342	*	C	32	G	33		cWW		cWW
64	IL_5FDU_074	5FDU	0.4312	1	Minor groove platform (H)	1A	LSU rRNA	G	1877	A	1879	G	1880	*	C	1915	C	1916		cWW	ncWS	cWW
65	IL_4V4Q_244	4V4Q	0.4009	0	Single bulged A (H)	CA	SSU rRNA	U	1440	A	1441	G	1442	*	C	1460	G	1461		cWW	tHS	cWW
66	IL_2QWY_009	2QWY	0.3043	0	Minor groove platform	C	SAM-II riboswitch	U	40	A	41	G	42	*	C	23	A	24		cWW	tHS	cWW
67	IL_5A2Q_070	5A2Q	0.2491	0	Minor groove platform (H)	2	SSU rRNA	C	1363	U	1364	G	1365	*	C	1374	G	1375	ncSH	cWW	tHS	cWW
68	IL_4BTS_328	4BTS	0.2121	0	Minor groove platform (H)	DA	SSU rRNA	C	1278	U	1279	G	1280	*	C	1289	G	1290	cSH	cWW	tHS	cWW
69	IL_4V88_454	4V88	0.3510	0	Minor groove platform	A6	SSU rRNA	C	1306	U	1307	G	1308	*	C	1317	G	1318	cSH	cWW	tHS	cWW
70	IL_3J7Y_051	3J7Y	0.3510	0		A	LSU rRNA	U	2955	A	2956	G	2957	*	C	2967	A	2968		cWW	tHS	cWW
71	IL_4V8P_322	4V8P	0.3534	0		F1	LSU rRNA	C	470	A	471	C	472	*	G	506	G	507		ncWW	ntHS	cWW
72	IL_3J9M_065	3J9M	0.5375	0	Minor groove platform (H)	AA	SSU rRNA	C	694	A	695	U	696	*	A	819	G	820		cWW	ntHS	cWW
73	IL_4BTS_267	4BTS	0.4603	0	Minor groove platform (H)	DA	SSU rRNA	C	49	A	50	U	51	*	A	420	G	421		cWW	tHS	cWW
74	IL_3J9W_004	3J9W	0.4528	0	Minor groove platform (H)	AA	SSU rRNA	C	56	A	57	U	58	*	A	364	G	365		cWW	tHS	cWW
75	IL_4V88_388	4V88	0.4793	0	Minor groove platform	A6	SSU rRNA	C	50	A	51	U	52	*	A	428	G	429		cWW	tHS	cWW
76	IL_1FJG_004	1FJG	0.5144	0	Minor groove platform (H)	A	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
77	IL_4V4Q_181	4V4Q	0.5389	0	Minor groove platform (H)	CA	SSU rRNA	C	54	A	55	U	56	*	A	356	G	357		cWW	tHS	cWW
78	IL_5A2Q_005	5A2Q	0.4918	0	Minor groove platform (H)	2	SSU rRNA	C	49	A	50	U	51	*	A	476	G	477		cWW	tHS	cWW
79	IL_5AJ3_004	5AJ3	0.5537	0	Minor groove platform (H)	A	SSU rRNA	C	48	A	49	U	50	*	A	175	G	176		cWW	tHS	cWW
80	IL_3J7A_004	3J7A	0.5176	0	Minor groove platform (H)	A	SSU rRNA	C	50	A	51	U	52	*	A	434	G	435		cWW	tHS	cWW
81	IL_3JAM_005	3JAM	0.5046	0	Minor groove platform (H)	2	SSU rRNA	C	50	A	51	U	52	*	A	427	G	428		cWW	ntHS	cWW
82	IL_1FJG_052	1FJG	0.5176	0		A	SSU rRNA	C	1260	A	1261	C	1262	*	G	1273	G	1274			tHS	cWW
83	IL_4UYK_001	4UYK	0.4251	0	Minor groove platform	R	SRP RNA	C	122	A	123	C	124	*	G	77	G	78			tHS	cWW
84	IL_3J9W_042	3J9W	0.5543	2	Minor groove platform (H)	AA	SSU rRNA	U	1208	U	1211	C	1212	*	G	1067	G	1068		cWW	tHS	cWW
85	IL_4V4Q_227	4V4Q	0.5909	2	Minor groove platform (H)	CA	SSU rRNA	U	1199	U	1202	C	1203	*	G	1057	G	1058		cWW	tHS	cWW
86	IL_1FJG_042	1FJG	0.6352	2	Minor groove platform (H)	A	SSU rRNA	U	1199	G	1202	C	1203	*	G	1057	G	1058		cWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UACC*GA	13
CAC*GG	12
CAU*AG	10
UCC*GA	9
CUG*CG	5
UUU*AA	4
UAG*CA	3
UAG*CG	3
CCAG*CG	3
UUA*UG	2
GCG*CC	2
GAG*CC	2
CCU*AG	2
CCGG*CG	2
UCAUC*GG	2
GGG*CC	1
AAG*CU	1
UCG*CA	1
ACA*UU	1
ACG*CU	1
UACU*AA	1
GAA*UC	1
GAU*AC	1
UCU*AA	1
UAAU*AA	1
GAAG*CC	1
UCAGC*GG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	33
C*	17
AC*	14
U*	11
CA*	3
AA*	2
CG*	2
CAU*	2
G*	1
CAG*	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_47827.1 Version IL_47827.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_47827.1 Version IL_47827.1 of this group appears in releases 2.0 to 2.0

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Csv

Json