Motif IL_50196.1 Version IL_50196.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V8P | 0.6358 | 0 | F1 | LSU rRNA | U | 245 | G | 246 | * | U | 173 | A | 174 | A | 175 | cWW | cWW | |
| 2 | ➜ | 5A2Q | 0.4074 | 1 | 3 | IRES | G | 135 | G | 137 | * | U | 287 | A | 288 | C | 289 | cWW | cWW | |
| 3 | ➜ | 1FJG | 0.1906 | 2 | A | SSU rRNA | G | 1491 | G | 1494 | * | C | 1407 | A | 1408 | C | 1409 | cWW | cWW | |
| 4 | ➜ | 4ZC7 | 0.1640 | 2 | C+D | RNA duplex | A | 16 | G | 19 | * | C | 30 | G | 31 | U | 32 | cWW | cWW | |
| 5 | ➜ | 3TD1 | 0.1368 | 2 | A+B | RNA (23-mer) | G | 16 | G | 19 | * | C | 30 | G | 31 | C | 32 | cWW | cWW | |
| 6 | ➜ | 3TD1 | 0.1498 | 2 | B+A | RNA (23-mer) | G | 39 | G | 42 | * | C | 7 | G | 8 | C | 9 | cWW | cWW | |
| 7 | ➜ | 2A04 | 0.0623 | 2 | C+D | RNA (15-mer) + RNA (14-mer) | G | 7 | G | 10 | * | C | 26 | A | 27 | C | 28 | cWW | cWW | |
| 8 | ➜ | 2A04 | 0.0000 | 2 | A+B | RNA (15-mer) + RNA (14-mer) | G | 7 | G | 10 | * | C | 26 | A | 27 | C | 28 | cWW | cWW | |
| 9 | ➜ | 2F4S | 0.1149 | 2 | B+A | RNA (21-mer) | G | 1491 | G | 1494 | * | C | 1407 | A | 1408 | C | 1409 | cWW | cWW | |
| 10 | ➜ | 1O9M | 0.1112 | 2 | B+A | EUBACTERIAL A-SITE | G | 1491 | G | 1494 | * | C | 1407 | A | 1408 | C | 1409 | cWW | cWW | |
| 11 | ➜ | 1T0E | 0.1963 | 2 | Decoding loop related | A+C | RNA (18-mer) + RNA (17-mer) | G | 7 | G | 10||A | * | C | 16 | A | 17 | C | 18 | cWW | cWW |
| 12 | ➜ | 4IOA | 0.3081 | 2 | X | LSU rRNA | G | 2846 | C | 2849 | * | G | 2818 | G | 2819 | C | 2820 | cWW | cWW | |
| 13 | ➜ | 3J9W | 0.4365 | 2 | BA | LSU rRNA | U | 2896 | C | 2899 | * | G | 2868 | A | 2869 | G | 2870 | cWW | cWW | |
| 14 | ➜ | 4V4Q | 0.4954 | 2 | CA | SSU rRNA | U | 1445 | C | 1448 | * | G | 1455 | A | 1456 | G | 1457 | cWW | cWW | |
| 15 | ➜ | 3J9W | 0.4667 | 2 | AA | SSU rRNA | U | 1454 | C | 1457 | * | G | 1465 | A | 1466 | G | 1467 | cWW | cWW | |
| 16 | ➜ | 3NDB | 0.4777 | 2 | M | SRP RNA | U | 175 | C | 178 | * | G | 152 | A | 153 | G | 154 | cWW | cWW | |
| 17 | ➜ | 2PXV | 0.4447 | 4 | B | 4.5 S RNA | U | 139 | G | 144 | * | C | 167 | A | 168 | A | 169 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CAC | 6 |
| UAAC*GAG | 3 |
| GAAG*CGC | 2 |
| GAG*UAC | 1 |
| UACCAG*CAA | 1 |
| UGAC*GAG | 1 |
| GGAC*GGC | 1 |
| UG*UAA | 1 |
| AAAG*CGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*A | 9 |
| AA*G | 3 |
| ACCA*A | 1 |
| GA*A | 1 |
| GA*G | 1 |
| *A | 1 |
| A*A | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Decoding loop related (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.06 | Avg 0.39 | Max 0.99
Coloring options: