Description:
Leadzyme Motif. SSU Decoding site motif, extended.
Basepair signature:
cWW-cWW-L-R-L-cWW
Free text annotation:
More than one motif
Intraclusteral linkage
Min 0.92 | Avg 0.46 | Max 0.92
Help
#D - ordering by discrepancy relative to the exemplar, #S - ordering by similarity (same as in the heat map). More
#D#SLoop idPDBDiscBulges 1 2 3 4 5break 6 7 8 91-92-85-6
111NUV0.00001C22C23G24A25C27*G43G44A45G46cWWcWWcWW
222FQN0.92470A38A39A40A41G42*C7G8C9U10cWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AAAAG*CGCU1
CCGAGC*GGAG1
Non-Watson-Crick part of the motif
SequenceCounts
AAA*GC1
CGAG*GA1

Release history

Release0.90.100.110.12
Date2013-02-172013-02-172013-02-172013-02-17
StatusNew id, 2 parentsExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_54965.1Only in the parent motif
IL_48285.1
Compare
IL_1NUV_002IL_2FQN_002IL_2QBG_108
IL_09348.2
Compare
IL_2FQN_002IL_1NUV_002IL_4A1B_070, IL_3U5F_017

Children motifs

Child motifCommon motif instancesOnly in IL_54965.1Only in the child motif
IL_09348.4
Compare
IL_1NUV_002IL_2FQN_002IL_4A1B_070, IL_2QBG_108
IL_09520.1
Compare
IL_2FQN_002IL_1NUV_002IL_3U5F_017

Mutual discrepancy heat map legend: