Motif IL_54965.1 Version IL_54965.1 of this group appears in releases 0.9 to 0.12
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 1NUV | 0.0000 | 1 | C+D | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | G | 24 | A | 25 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | cWW | cWW | |
| 2 | ➜ | 2FQN | 0.9247 | 0 | B+A | RNA (23-mer) | A | 38 | A | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | G | 8 | C | 9 | U | 10 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAG*CGCU | 1 |
| CCGAGC*GGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GC | 1 |
| CGAG*GA | 1 |
Release history
| Release | 0.9 | 0.10 | 0.11 | 0.12 |
|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_54965.1 | Only in the parent motif |
|---|---|---|---|
| IL_48285.1 Compare | IL_1NUV_002 | IL_2FQN_002 | IL_2QBG_108 |
| IL_09348.2 Compare | IL_2FQN_002 | IL_1NUV_002 | IL_4A1B_070, IL_3U5F_017 |
Children motifs
| Child motif | Common motif instances | Only in IL_54965.1 | Only in the child motif |
|---|---|---|---|
| IL_09348.4 Compare | IL_1NUV_002 | IL_2FQN_002 | IL_4A1B_070, IL_2QBG_108 |
| IL_09520.1 Compare | IL_2FQN_002 | IL_1NUV_002 | IL_3U5F_017 |
- Annotations
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Heat map statistics
- Min 0.92 | Avg 0.46 | Max 0.92
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