Motif IL_57391.1 Version IL_57391.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-13 | 1-14 | 2-4 | 2-12 | 2-13 | 3-4 | 3-5 | 3-11 | 3-12 | 3-13 | 4-10 | 4-11 | 5-6 | 5-9 | 5-10 | 6-9 | 7-8 | 11-12 | 12-14 | 13-14 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V19 | 0.8549 | 0 | A | LSU rRNA | C | 393 | C | 394 | C | 395 | C | 396 | A | 397 | A | 398 | A | 399 | * | U | 410 | C | 411 | C | 412 | A | 413 | A | 414 | U | 415 | G | 416 | cWW | ntWH | cWW | ntWS | ntSS | cWW | |||||||||||||||
| 2 | ➜ | 3PDR | 0.3949 | 0 | A | M-box riboswitch (ykoK leader) | C | 75 | G | 76 | C | 77 | C | 78 | A | 79 | A | 80 | U | 81 | * | A | 60 | A | 61 | A | 62 | A | 63 | A | 64 | U | 65 | G | 66 | cWW | ncWS | ncSW | ntSH | tHS | cWW | |||||||||||||||
| 3 | ➜ | 4V8P | 0.0000 | 0 | F1 | LSU rRNA | A | 2223 | A | 2224 | C | 2225 | C | 2226 | A | 2227 | A | 2228 | G | 2229 | * | U | 2206 | C | 2207 | A | 2208 | A | 2209 | A | 2210 | G | 2211 | U | 2212 | cWW | ncWW | ncSW | ntSH | ntHS | tHS | cWW | ||||||||||||||
| 4 | ➜ | 4V91 | 0.1278 | 0 | 1 | LSU rRNA | A | 2228 | A | 2229 | C | 2230 | C | 2231 | A | 2232 | A | 2233 | G | 2234 | * | U | 2211 | C | 2212 | A | 2213 | A | 2214 | A | 2215 | G | 2216 | U | 2217 | cWW | cWW | ncSW | tHS | cWW | ||||||||||||||||
| 5 | ➜ | 5AJ0 | 0.2030 | 0 | A2 | LSU rRNA | A | 3703 | A | 3704 | U | 3705 | G | 3706 | A | 3707 | A | 3708 | G | 3709 | * | U | 3686 | C | 3687 | A | 3688 | A | 3689 | A | 3690 | G | 3691 | U | 3692 | cWW | cWW | ntSH | cSW | ntSH | tHS | cWW | ||||||||||||||
| 6 | ➜ | 4V9F | 0.2798 | 0 | 0 | LSU rRNA | G | 1926 | A | 1927 | C | 1928 | G | 1929 | A | 1930 | A | 1931 | G | 1932 | * | U | 1907 | G | 1908 | A | 1909 | A | 1910 | C | 1911 | A | 1912 | C | 1913 | cWW | ncWW | ntSH | tHS | cWW | ||||||||||||||||
| 7 | ➜ | 2OIU | 0.7083 | 0 | P | L1 Ribozyme RNA Ligase | C | 34 | U | 35 | C | 36 | U | 37 | U | 38 | A | 39 | G | 40 | * | C | 21 | G | 22 | A | 23 | C | 24 | C | 25 | A | 26 | G | 27 | cWW | cWW | ntWH | ntSH | tHS | cWW | |||||||||||||||
| 8 | ➜ | 3J7P | 0.6739 | 1 | 5 | LSU rRNA | A | 2642 | G | 2643 | G | 2644 | G | 2645 | C | 2646 | A | 2647 | G | 2648 | * | C | 2685 | G | 2686 | G | 2688 | C | 2689 | C | 2690 | U | 2691 | U | 2692 | ncWW | cWW | ncWW | ncWH | cWW | cWH | ncWH | ||||||||||||||
| 9 | ➜ | 3J7P | 0.8165 | 0 | S2 | SSU rRNA | C | 645 | G | 646 | U | 647 | A | 648 | U | 649 | A | 650 | U | 651 | * | G | 23 | C | 24 | A | 25 | U | 26 | A | 27 | U | 28 | G | 29 | cWW | ncWH | ncWH | ncWH | ncWW | ncWH | ncWW | ncWW | cWW | ncWH | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AACCAAG*UCAAAGU | 2 |
| AGGGCAG*CGUGCCUU | 1 |
| CGUAUAU*GCAUAUG | 1 |
| CUCUUAG*CGACCAG | 1 |
| AAUGAAG*UCAAAGU | 1 |
| CGCCAAU*AAAAAUG | 1 |
| CCCCAAA*UCCAAUG | 1 |
| GACGAAG*UGAACAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACCAA*CAAAG | 2 |
| GGGCA*GUGCCU | 1 |
| GUAUA*CAUAU | 1 |
| UCUUA*GACCA | 1 |
| AUGAA*CAAAG | 1 |
| GCCAA*AAAAU | 1 |
| CCCAA*CCAAU | 1 |
| ACGAA*GAACA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-L-R-R-R-L-L-tHS-cWW
- Heat map statistics
- Min 0.13 | Avg 0.59 | Max 0.99
Coloring options: