Motif IL_61930.1 Version IL_61930.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 3-4 | 3-5 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 5DCV | 0.1421 | 0 | Major groove platform with intercalated tWH | D | RNA (47-MER) | C | 45 | U | 46 | A | 47 | A | 48 | * | U | 5 | G | 6 | cWW | cSH | tSH | cWW |
| 2 | ➜ | 4PCJ | 0.1111 | 0 | Major groove platform with intercalated tWH | A | trCUG-3('5) | C | 8 | U | 9 | A | 10 | A | 11 | * | U | 27 | G | 28 | cWW | cSH | ntSH | cWW |
| 3 | ➜ | 1U6B | 0.0000 | 0 | Major groove platform with intercalated tWH | B | 197-MER | C | 147 | U | 148 | A | 149 | A | 150 | * | U | 162 | G | 163 | cWW | cSH | ntSH | cWW |
| 4 | ➜ | 4V91 | 0.5744 | 2 | 1 | LSU rRNA | C | 3225 | A | 3226 | A | 3227 | G | 3229 | * | U | 3258 | G | 3260 | cWW | cWW | |||
| 5 | ➜ | 4V88 | 0.7413 | 2 | A5 | LSU rRNA | C | 3225 | A | 3226 | A | 3227 | G | 3229 | * | U | 3258 | G | 3260 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAA*UG | 3 |
| CAACG*UUG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA* | 3 |
| AAC*U | 2 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform with intercalated tWH (3)
- Basepair signature
- cWW-L-cSH-cWW
- Heat map statistics
- Min 0.11 | Avg 0.40 | Max 0.77
Coloring options: