Motif IL_66591.1 Version IL_66591.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-4 | 1-5 | 2-3 | 2-4 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 4V8P | 0.1627 | 2 | F1 | LSU rRNA | G | 2391 | A | 2393 | * | U | 2969 | A | 2970 | C | 2972 | cWW | cWW | ncSH | |||
| 2 | ➜ | 4V88 | 0.1412 | 2 | A5 | LSU rRNA | G | 2396 | A | 2398 | * | U | 2981 | A | 2982 | C | 2984 | cWW | cWW | ncSH | |||
| 3 | ➜ | 5AJ0 | 0.1611 | 2 | A2 | LSU rRNA | G | 3871 | A | 3873 | * | U | 4520 | A | 4521 | C | 4523 | cWW | cWW | ncSH | |||
| 4 | ➜ | 3J79 | 0.0000 | 2 | A | LSU rRNA | G | 2689 | A | 2691 | * | U | 3340 | A | 3341 | C | 3343 | cWW | cWW | ncSH | |||
| 5 | ➜ | 3JCS | 0.1429 | 2 | 2 | LSU rRNA | G | 642 | A | 644 | * | U | 1420 | A | 1421 | C | 1423 | cWW | cWW | ncSH | |||
| 6 | ➜ | 3JCS | 0.7401 | 1 | 2 | LSU rRNA | U | 1330 | A | 1331 | * | U | 1348 | A | 1349 | G | 1351 | tHS | cWW | cWW | |||
| 7 | ➜ | 4TZZ | 0.8846 | 1 | I | T-box Stem I RNA | A | 77 | C | 78 | * | G | 28 | A | 29 | U | 31 | cWW | cWW | ||||
| 8 | ➜ | 3JAM | 0.9483 | 0 | 2 | SSU rRNA | G | 1232 | A | 1233 | * | U | 1249 | U | 1250 | C | 1251 | cWW | cWW | ncWW | |||
| 9 | ➜ | 5AJ0 | 0.8350 | 0 | A2 | LSU rRNA | G | 913 | G | 914 | * | C | 727 | C | 728 | C | 729 | cWW | cWW | ncWW | |||
| 10 | ➜ | 3WBM | 0.9593 | 0 | Other IL | X+Y | RNA (25-MER) | U | 23 | C | 24 | * | G | 2 | U | 3 | A | 4 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAA*UACC | 5 |
| UC*GUA | 1 |
| GG*CCC | 1 |
| AC*GAUU | 1 |
| UA*UAAG | 1 |
| GA*UUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*AC | 5 |
| *U | 2 |
| *C | 1 |
| *AU | 1 |
| *AA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Other IL (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.11 | Avg 0.60 | Max 0.99
Coloring options: