Motif IL_68313.1 Version IL_68313.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 1-13 | 1-14 | 2-13 | 3-12 | 4-5 | 5-11 | 6-10 | 7-10 | 8-9 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3J9W | 0.1475 | AA | SSU rRNA | G | 897 | G | 898 | A | 899 | G | 900 | U | 901 | A | 902 | C | 903 | G | 904 | * | U | 915 | G | 916 | A | 917 | A | 918 | A | 919 | C | 920 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |||
| 2 | ➜ | 4V4Q | 0.1307 | CA | SSU rRNA | G | 887 | G | 888 | A | 889 | G | 890 | U | 891 | A | 892 | C | 893 | G | 894 | * | U | 905 | A | 906 | A | 907 | A | 908 | A | 909 | C | 910 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |||
| 3 | ➜ | 1FJG | 0.1033 | A | SSU rRNA | G | 887 | G | 888 | A | 889 | G | 890 | U | 891 | A | 892 | C | 893 | G | 894 | * | U | 905 | G | 906 | A | 907 | A | 908 | A | 909 | C | 910 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |||
| 4 | ➜ | 4V88 | 0.0849 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | A6 | SSU rRNA | G | 1111 | G | 1112 | A | 1113 | G | 1114 | U | 1115 | A | 1116 | U | 1117 | G | 1118 | * | U | 1129 | G | 1130 | A | 1131 | A | 1132 | A | 1133 | C | 1134 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | ||
| 5 | ➜ | 5A2Q | 0.0000 | 2 | SSU rRNA | G | 1168 | G | 1169 | A | 1170 | G | 1171 | U | 1172 | A | 1173 | U | 1174 | G | 1175 | * | U | 1186 | G | 1187 | A | 1188 | A | 1189 | A | 1190 | C | 1191 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |||
| 6 | ➜ | 4BTS | 0.0758 | DA | SSU rRNA | G | 1083 | A | 1084 | A | 1085 | G | 1086 | U | 1087 | A | 1088 | U | 1089 | G | 1090 | * | U | 1102 | G | 1103 | A | 1104 | A | 1105 | A | 1106 | C | 1107 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |||
| 7 | ➜ | 3JAM | 0.0767 | 2 | SSU rRNA | G | 1110 | G | 1111 | A | 1112 | G | 1113 | U | 1114 | A | 1115 | U | 1116 | G | 1117 | * | U | 1128 | G | 1129 | A | 1130 | A | 1131 | A | 1132 | C | 1133 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |||
| 8 | ➜ | 3J7A | 0.1517 | A | SSU rRNA | C | 1212 | G | 1213 | A | 1214 | G | 1215 | U | 1216 | A | 1217 | U | 1218 | U | 1219 | * | A | 1230 | G | 1231 | A | 1232 | A | 1233 | A | 1234 | G | 1235 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |||
| 9 | ➜ | 3J7P | 0.9049 | S2 | SSU rRNA | G | 1780 | A | 1781 | G | 1782 | C | 1783 | G | 1784 | C | 1785 | U | 1786 | G | 1787 | * | C | 1747 | G | 1748 | G | 1749 | C | 1750 | C | 1751 | C | 1752 | ncWW | cWW | ncWW | ncWW | ntWH | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGUAUG*UGAAAC | 3 |
| GGAGUACG*UGAAAC | 2 |
| GAGCGCUG*CGGCCC | 1 |
| CGAGUAUU*AGAAAG | 1 |
| GAAGUAUG*UGAAAC | 1 |
| GGAGUACG*UAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGUAU*GAAA | 4 |
| GAGUAC*GAAA | 2 |
| AGCGCU*GGCC | 1 |
| AAGUAU*GAAA | 1 |
| GAGUAC*AAAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 8x6 Sarcin-Ricin with inserted Y; G-bulge (1)
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
- Heat map statistics
- Min 0.07 | Avg 0.27 | Max 0.93
Coloring options: