Motif IL_73934.1 Version IL_73934.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8		9	1-8	1-9	2-7	2-8	3-6	3-7	4-5
1	IL_3FS0_001➜	3FS0	0.4867	0	UAA/GAN related	A+B	RNA (10-mer) + RNA (11-mer)	U	46	G	47	A	48	G	49	*	C	-1	G	1	G	2	A	3	A	4	ntSH	cWW	ntHH		tHS		cWW
2	IL_3FTM_002➜	3FTM	0.4238	0	UAA/GAN related	C+D	RNA (11-mer) + RNA (12-mer)	U	46	G	47	A	48	G	49	*	C	-1	G	1	G	2	A	3	A	4	ntSH	cWW	ntSH		tHS		cWW
3	IL_3J9W_143➜	3J9W	0.2613	0		BA	LSU rRNA	U	1893	U	1894	A	1895	G	1896	*	C	1903	G	1904	A	1905	A	1906	G	1907	ntSH	cWW	ntWH		tHS		cWW
4	IL_5J7L_317➜	5J7L	0.2794	0	UAA/GAN related	DA	LSU rRNA	U	1864	U	1865	A	1866	G	1867	*	C	1874	G	1875	A	1876	A	1877	G	1878		cWW	ntSH	ntSH	tHS		cWW
5	IL_1X8W_002➜	1X8W	0.3894	0		A	Tetrahymena ribozyme RNA	U	205	A	206	A	207	C	208	*	G	112	A	113	A	114	A	115	G	116		cWW	ntSH	ncSW	tHS		cWW
6	IL_3J79_115➜	3J79	0.3598	1		A	LSU rRNA	U	3440	A	3441	A	3443	G	3444	*	C	3469	G	3470	A	3471	A	3472	G	3473	ntSH	cWW	ntWH		ntSS		cWW
7	IL_4V8P_422➜	4V8P	0.0000	2		F1	LSU rRNA	U	3043	A	3044	A	3046	A	3048	*	U	3073	G	3074	A	3075	A	3076	G	3077		cWW	ntSH		tHS		cWW
8	IL_5AN9_049➜	5AN9	0.2496	2		N	LSU rRNA	U	3390	C	3391	G	3393	A	3395	*	U	3420	G	3421	C	3422	C	3423	G	3424		cWW	tWH		ntHS		cWW
9	IL_3J9M_103➜	3J9M	0.3845	0		AA	SSU rRNA	A	1546	U	1547	A	1548	G	1549	*	C	1500	A	1501	A	1502	G	1503	U	1504		cWW	ntWH		tHS		cWW
10	IL_3J7A_006➜	3J7A	0.3713	1		A	SSU rRNA	U	64	A	65	A	67	U	68	*	A	84	G	85	A	86	A	87	A	88		cWW	ntSH		tHS		cWW
11	IL_3J7P_161➜	3J7P	0.3722	2		S2	SSU rRNA	U	63	A	64	G	66	A	68	*	U	81	G	82	A	83	A	84	A	85	ncWW	ncWW	ntWH		ntHS		cWW
12	IL_5A2Q_007➜	5A2Q	0.4033	2		2	SSU rRNA	U	63	A	64	G	66	A	68	*	U	81	G	82	A	83	A	84	A	85		cWW	ntWH				cWW
13	IL_3JAM_007➜	3JAM	0.3613	2		2	SSU rRNA	U	64	A	65	A	67	G	69	*	U	82	G	83	A	84	A	85	A	86		cWW	ntSH		tHS		cWW
14	IL_4V88_390➜	4V88	0.3745	2		A6	SSU rRNA	U	64	A	65	A	67	G	69	*	U	82	G	83	A	84	A	85	A	86		cWW	ntSH		tHS		cWW
15	IL_4BTS_269➜	4BTS	0.4367	1		DA	SSU rRNA	U	63	U	64	A	66	G	67	*	C	78	G	79	A	80	A	81	A	82		cWW	tWH		tHS		cWW
16	IL_5AJ0_077➜	5AJ0	0.9420	0		A2	LSU rRNA	C	1754	U	1755	C	1756	A	1757	*	U	1738	U	1739	G	1740	G	1741	G	1742	ncWW	cWW	ncWW		cWW	ncWW	cWW
17	IL_5G2X_008➜	5G2X	0.8883	0		A	Group II catalytic intron	U	306	U	307	U	308	G	309	*	C	260	A	261	A	262	A	263	G	264	ncWW	cWW	ncWW		ncWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UACGCA*UGAAA	2
UGAG*CGGAA	2
UUAG*CGAAG	2
UAUAAG*UGAAA	2
CUCA*UUGGG	1
UUUG*CAAAG	1
UUCAG*CGAAA	1
AUAG*CAAGU	1
UAAC*GAAAG	1
UACAG*CGAAG	1
UAAAUA*UGAAG	1
UCUGUA*UGCCG	1
UAUAU*AGAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
ACGC*GAA	2
GA*GGA	2
UA*GAA	2
AUAA*GAA	2
UC*UGG	1
UU*AAA	1
UCA*GAA	1
UA*AAG	1
AA*AAA	1
ACA*GAA	1
AAAU*GAA	1
CUGU*GCC	1
AUA*GAA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: UAA/GAN related (3)
Basepair signature: cWW-R-tWH-tHS-cWW
Heat map statistics: Min 0.15 | Avg 0.50 | Max 0.99

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Coloring options: Nucleotide numbers

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