Motif IL_79493.1 Version IL_79493.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-10 | 1-11 | 2-10 | 3-8 | 5-7 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 5FDU | 0.5580 | 1A | LSU rRNA | U | 2857 | G | 2858 | U | 2859 | A | 2860 | A | 2861 | G | 2862 | * | U | 2875 | U | 2876 | G | 2877 | A | 2878 | G | 2879 | cWW | tSH | ntHS | tHH | cWW | |||
| 2 | ➜ | 5J7L | 0.5666 | DA | LSU rRNA | U | 2847 | G | 2848 | U | 2849 | A | 2850 | A | 2851 | G | 2852 | * | U | 2865 | U | 2866 | G | 2867 | A | 2868 | G | 2869 | cWW | tSH | tHH | cWW | ||||
| 3 | ➜ | 3J9W | 0.4852 | BA | LSU rRNA | U | 2872 | G | 2873 | G | 2874 | A | 2875 | A | 2876 | G | 2877 | * | U | 2890 | G | 2891 | G | 2892 | A | 2893 | G | 2894 | ntSH | cWW | ntSH | tSS | ntHH | cWW | ||
| 4 | ➜ | 4V88 | 0.0000 | A5 | LSU rRNA | U | 3332 | G | 3333 | U | 3334 | A | 3335 | A | 3336 | G | 3337 | * | C | 3367 | U | 3368 | G | 3369 | A | 3370 | G | 3371 | cWW | tSH | tHH | cWW | ||||
| 5 | ➜ | 4V9F | 0.2334 | 0 | LSU rRNA | U | 2864 | G | 2865 | U | 2866 | G | 2867 | C | 2868 | G | 2869 | * | U | 2888 | U | 2889 | A | 2890 | A | 2891 | G | 2892 | cWW | tSH | tHH | cWW | ||||
| 6 | ➜ | 4IOA | 0.3241 | X | LSU rRNA | U | 2822 | G | 2823 | C | 2824 | A | 2825 | C | 2826 | G | 2827 | * | U | 2840 | U | 2841 | C | 2842 | A | 2843 | G | 2844 | cWW | tSH | tHH | cWW | ||||
| 7 | ➜ | 4V8P | 0.2670 | F1 | LSU rRNA | U | 3290 | G | 3291 | U | 3292 | A | 3293 | A | 3294 | G | 3295 | * | C | 3323 | U | 3324 | G | 3325 | A | 3326 | G | 3327 | ntSH | cWW | tSH | ntHH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAAG*UUGAG | 2 |
| UGUAAG*CUGAG | 2 |
| UGCACG*UUCAG | 1 |
| UGUGCG*UUAAG | 1 |
| UGGAAG*UGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*UGA | 4 |
| GCAC*UCA | 1 |
| GGAA*GGA | 1 |
| GUGC*UAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tSH-L-R-L-tHH-cWW
- Heat map statistics
- Min 0.08 | Avg 0.38 | Max 0.66
Coloring options: