Motif IL_82127.1 Version IL_82127.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 5BTP | 0.1492 | 8 | A | RNA (62-MER) | C | 15 | U | 16 | G | 25 | * | C | 38 | A | 39 | U | 40 | G | 41 | cWW | cWW | cWW | ||
| 2 | ➜ | 4ZNP | 0.0000 | 9 | A | pfI Riboswitch | C | 12 | U | 13 | G | 23 | * | C | 34 | G | 35 | U | 36 | G | 37 | cWW | cWW | cWW | ||
| 3 | ➜ | 4QIK | 0.5921 | 0 | C+D | RNA (23-mer) | C | 10 | U | 11 | G | 12 | * | U | 11 | G | 12 | U | 13 | G | 14 | cWW | cWW | cWW | ||
| 4 | ➜ | 4V8P | 0.6103 | 1 | F1 | LSU rRNA | U | 1843 | U | 1844 | C | 1846 | * | G | 1648 | G | 1649 | U | 1650 | A | 1651 | cWW | ncSW | cWW | cWW | |
| 5 | ➜ | 4V88 | 0.8738 | 0 | A6 | SSU rRNA | U | 283 | G | 284 | G | 285 | * | C | 270 | A | 271 | U | 272 | G | 273 | cWW | ncWS | cWW | ||
| 6 | ➜ | 3JAM | 0.9032 | 0 | 2 | SSU rRNA | U | 282 | G | 283 | G | 284 | * | C | 269 | A | 270 | U | 271 | G | 272 | cWW | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*CAUG | 2 |
| UUUC*GGUA | 1 |
| CUG*UGUG | 1 |
| CUGGCGGAUUAG*CGUG | 1 |
| CUGACGGAACG*CAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AU | 2 |
| UU*GU | 1 |
| U*GU | 1 |
| UGGCGGAUUA*GU | 1 |
| UGACGGAAC*AU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWW-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.58 | Max 0.95
Coloring options: