Motif IL_99620.1 Version IL_99620.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 2-15 | 3-14 | 4-11 | 4-13 | 5-12 | 5-13 | 6-10 | 6-11 | 7-8 | 7-10 | 8-9 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3J7P | 0.0000 | 1 | S2 | SSU rRNA | G | 1406 | U | 1407 | U | 1408 | A | 1409 | C | 1410 | G | 1411 | C | 1412 | G | 1413 | * | C | 1433 | C | 1434 | C | 1435 | C | 1436 | A | 1438 | A | 1439 | C | 1440 | cWW | ncWW | ncWW | cWW | ncWW | ncWH | cWW | |||||||
| 2 | ➜ | 4V88 | 0.9389 | 1 | A6 | SSU rRNA | G | 496 | G | 497 | G | 498 | U | 499 | C | 500 | U | 501 | U | 502 | G | 503 | * | C | 484 | A | 485 | G | 486 | G | 487 | G | 488 | C | 490 | C | 491 | cWW | ncSW | ncWW | ncWS | ntWH | ncWS | ncSW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGUCUUG*CAGGGCCC | 1 |
| GUUACGCG*CCCCCAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUCUU*AGGGCC | 1 |
| UUACGC*CCCCAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-R-R-R-L-L-L-cWW-L-R-cWW
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: