#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14NLF|1|A (rep)23S ribosomal RNA Sarcin Ricin Loop2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-ray diffraction12014-11-19
25D99|1|ARNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNAEnterobacteria phage L13DW4 redetermined by direct methods starting from random phase anglesX-ray diffraction0.972016-04-13
36Y0Y|1|ARNA (27-MER)synthetic constructSarcin Ricin Loop, mutant C2666UX-ray diffraction0.952021-02-17
41Q9A|1|ASarcin/ricin 23S rRNACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-ray diffraction1.042003-11-25
57QP2|1|ARNA (27-MER)synthetic construct1-deazaguanosine modified-RNA Sarcin Ricin LoopX-ray diffraction0.92022-07-20
64NMG|1|A23S ribosomal RNA Sarcin Ricin Loop2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-ray diffraction1.012014-11-19
76ZYB|1|ASarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationX-ray diffraction0.92020-12-16
83DW4|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-ray diffraction0.972009-03-24
93DW6|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-ray diffraction12009-03-24
107L3R|1|ARNA (27-MER)synthetic construct23S Sarcin Ricin Loop with a 3-deazapurine A2670X-ray diffraction1.012021-05-05
114Y27|1|A27-mer 23S Sarcin-Ricil LoopEscherichia coliE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-ray diffraction12015-11-18
127JJE|1|ARNA (27-MER)synthetic constructSarcin-ricin loop with guanosine dithiophosphate residue.X-ray diffraction1.252020-12-23
133DVZ|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-ray diffraction12009-03-24
144NXH|1|A23S ribosomal RNA Sarcin Ricin LoopEscherichia coli2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-ray diffraction1.162014-12-10
155NQI|1|AE.Coli 27-mer SRL RNAEscherichia coliE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-ray diffraction0.852017-07-26
163S7C|1|AEcoli 23 S rRNA Sarcin Ricin loopCrystal structure of a 2'-azido-uridine-modified RNAX-ray diffraction1.12012-04-11
175MRX|1|ARNA (27-MER)Escherichia coli27-nt SRL with a 5-hydroxymethyl cytidine modificationX-ray diffraction0.852018-01-17
187QSH|1|A23S ribosomal RNA Sarcin Ricin Loop 27-nucleotide fragmentsynthetic construct23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648X-ray diffraction0.862023-01-25
193DW5|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-ray diffraction0.962009-03-24
203DW7|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-ray diffraction12009-03-24
21483D|1|ASARCIN/RICIN RRNA DOMAINCRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-ray diffraction1.111999-10-08
223S8U|1|AEcoli 23 S rRNA Sarcin Ricin loopEscherichia coliCrystal structure of a 2-azido-adenine-modified RNAX-ray diffraction1.22012-04-11
237JJD|1|ARNA (27-MER)synthetic constructSarcin-ricin loop with guanosine monothiophosphate residue.X-ray diffraction1.212020-12-23
241MSY|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNAGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-ray diffraction1.412003-02-25
25480D|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-ray diffraction1.51999-10-08
266Y0T|1|BRNA (27-MER)synthetic constructSarcin Ricin Loop, mutant C2666A U2653G C2667AX-ray diffraction1.3932021-02-17
276Y0T|1|ARNA (27-MER)synthetic constructSarcin Ricin Loop, mutant C2666A U2653G C2667AX-ray diffraction1.3932021-02-17
287JJF|1|ARNA/DNA (27-mer)Escherichia coliSarcin-ricin loop with modified residue.X-ray diffraction1.22020-12-23
297EEN|1|ADNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction1.72022-03-23
307EEN|1|BDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction1.72022-03-23
317EEN|1|DDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction1.72022-03-23
321JBS|1|D29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-ray diffraction1.972001-10-26
337EEN|1|CDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction1.72022-03-23
341JBS|1|C29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-ray diffraction1.972001-10-26
357UCR|1|ASarcin-Ricin loop RNAHomo sapiensJoint X-ray/neutron structure of the Sarcin-Ricin loop RNAX-ray diffraction12022-07-20

Release history

Release3.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.330
Date2023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-10

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11MSY|1|AGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.4131
26Y0Y|1|ASarcin Ricin Loop, mutant C2666UX-RAY DIFFRACTION0.9527
36Y0T|1|ASarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.39330
46Y0T|1|BSarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.39330
54NLF|1|A2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION128
6480D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.527
73DW7|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION137
84NMG|1|A2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.0136
97QP2|1|A1-deazaguanosine modified-RNA Sarcin Ricin LoopX-RAY DIFFRACTION0.932
101Q9A|1|ACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.0438
11483D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.1139
127UCR|1|AJoint X-ray/neutron structure of the Sarcin-Ricin loop RNAX-RAY DIFFRACTION156
133DW5|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.9632
147L3R|1|A23S Sarcin Ricin Loop with a 3-deazapurine A2670X-RAY DIFFRACTION1.0130
153S8U|1|ACrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.234
167JJD|1|ASarcin-ricin loop with guanosine monothiophosphate residue.X-RAY DIFFRACTION1.2129
173DVZ|1|ACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION135
187JJE|1|ASarcin-ricin loop with guanosine dithiophosphate residue.X-RAY DIFFRACTION1.2529
196ZYB|1|ASarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationX-RAY DIFFRACTION0.930
203S7C|1|ACrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.132
215D99|1|A3DW4 redetermined by direct methods starting from random phase anglesX-RAY DIFFRACTION0.9730
223DW4|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.9726
233DW6|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION128
244Y27|1|AE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-RAY DIFFRACTION125
255NQI|1|AE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-RAY DIFFRACTION0.8534
265MRX|1|A27-nt SRL with a 5-hydroxymethyl cytidine modificationX-RAY DIFFRACTION0.8534
277JJF|1|ASarcin-ricin loop with modified residue.X-RAY DIFFRACTION1.227
284NXH|1|A2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.1632
297QSH|1|A23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648X-RAY DIFFRACTION0.8634
307EEN|1|ABulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.714
317EEN|1|BBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.715
327EEN|1|CBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.714
337EEN|1|DBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.714
341JBS|1|DCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
351JBS|1|CCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
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