Equivalence class NR_2.5_65789.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6N6F|1|D (rep) | RNA (5'-R(P*GP*C)-3') | synthetic construct | Synthetic | Vibrio cholerae Oligoribonuclease bound to pGC | X-ray diffraction | 1.74 | 2019-06-12 | ||
| 2 | 7MPN|1|B | 5'-phosphorylated GC | synthetic construct | Synthetic | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | ||
| 3 | 7MPN|1|N | 5'-phosphorylated GC | synthetic construct | Synthetic | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | ||
| 4 | 7MPN|1|J | 5'-phosphorylated GC | synthetic construct | Synthetic | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | ||
| 5 | 4OHY|1|B | RNA (5'-R(*GP*C)-3') | C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state) | X-ray diffraction | 2 | 2014-05-14 | ||||
| 6 | 7MPN|1|P | 5'-phosphorylated GC | synthetic construct | Synthetic | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | ||
| 7 | 7MPN|1|H | 5'-phosphorylated GC | synthetic construct | Synthetic | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | ||
| 8 | 7MPN|1|L | 5'-phosphorylated GC | synthetic construct | Synthetic | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | ||
| 9 | 7MPN|1|D | 5'-phosphorylated GC | synthetic construct | Synthetic | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | ||
| 10 | 7MPN|1|F | 5'-phosphorylated GC | synthetic construct | Synthetic | Bartonella henselae NrnC bound to pGC | X-ray diffraction | 1.94 | 2021-09-15 | ||
| 11 | 4OI1|1|B | RNA (5'-R(*GP*C)-3') | Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II) | X-ray diffraction | 2.3 | 2014-05-14 | ||||
| 12 | 4OI0|1|B | RNA (5'-R(*GP*C)-3') | bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I) | X-ray diffraction | 2.2 | 2014-05-14 |
Release history
| Release | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7MPN|1|P | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 |
| 2 | 4OHY|1|B | C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state) | X-RAY DIFFRACTION | 2 | 2 |
| 3 | 4OI1|1|B | Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II) | X-RAY DIFFRACTION | 2.3 | 2 |
| 4 | 4OI0|1|B | bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I) | X-RAY DIFFRACTION | 2.2 | 2 |
| 5 | 7MPN|1|F | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 |
| 6 | 7MPN|1|J | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 |
| 7 | 7MPN|1|N | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 |
| 8 | 6N6F|1|D | Vibrio cholerae Oligoribonuclease bound to pGC | X-RAY DIFFRACTION | 1.74 | 3 |
| 9 | 7MPN|1|D | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 |
| 10 | 7MPN|1|B | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 |
| 11 | 7MPN|1|L | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 |
| 12 | 7MPN|1|H | Bartonella henselae NrnC bound to pGC | X-RAY DIFFRACTION | 1.94 | 2 |