NR_2.5_83717.114

Members (29)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4YBB\|1\|DA (rep)	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
2	4YBB\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
3	8B0X\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli B	Bacteria	RF02541	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	Electron microscopy	1.55	2022-11-30
4	7QQ3\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli K-12	Bacteria	RF02541	Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.	Electron microscopy	2.1	2023-01-18
5	8AYE\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	Electron microscopy	1.96	2023-03-01
6	7ZP8\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	Electron microscopy	2.2	2022-08-10
7	7K00\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	2020-09-23
8	8G6W\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.02	2023-04-05
9	6XZ7\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	Electron microscopy	2.1	2020-07-22
10	7Z20\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	Electron microscopy	2.29	2022-08-10
11	7LVK\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cfr-modified 50S subunit from Escherichia coli	Electron microscopy	2.2	2021-12-15
12	6PJ6\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High resolution cryo-EM structure of E.coli 50S	Electron microscopy	2.2	2020-01-22
13	8G6Y\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe	Electron microscopy	2.09	2023-04-05
14	8ANA\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit	Electron microscopy	2.1	2023-03-08
15	7N1P\|1\|23	Large subunit ribosomal RNA	23S rRNA	Escherichia coli K-12	Bacteria	RF02541	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	2021-07-14
16	7PJS\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	Electron microscopy	2.35	2021-10-20
17	7S1H\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli ribosome with antibiotic linezolid	Electron microscopy	2.35	2021-11-17
18	7S1K\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.42	2022-01-19
19	7O1A\|1\|BA	Large subunit ribosomal RNA	Ribosomal RNA 23S	Escherichia coli K-12	Bacteria	RF02541	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.4	2021-09-01
20	8EIU\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	Electron microscopy	2.24	2023-02-01
21	7S1J\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli ribosome with antibiotic radezolid	Electron microscopy	2.47	2022-03-02
22	7S1I\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.48	2022-03-02
23	7S1G\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	Electron microscopy	2.48	2021-11-17
24	8AKN\|1\|a	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli BW25113	Bacteria	RF02541	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	Electron microscopy	2.3	2023-03-08
25	7BL4\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli K-12	Bacteria	RF02541	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	Electron microscopy	2.4	2021-05-12
26	8G6X\|1\|a	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe	Electron microscopy	2.31	2023-03-22
27	6PCR\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 40o	Electron microscopy	2.5	2020-06-17
28	6PC6\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 47	Electron microscopy	2.5	2020-06-17
29	6PC7\|1\|I	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	E. coli 50S ribosome bound to compound 46	Electron microscopy	2.5	2020-06-17

Release history

Release	3.278	3.279	3.280	3.281
Date	2023-04-12	2023-04-19	2023-04-26	2023-05-03

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_2.5_83717.114	NR_2.5_83717.113	3.278	(29) 4YBB\|1\|CA, 7S1I\|1\|I, 7S1J\|1\|I, 7S1K\|1\|I, 7Z20\|1\|b, 7ZP8\|1\|b, 8AKN\|1\|a, 8ANA\|1\|a, 8AYE\|1\|a, 8B0X\|1\|a, 8EIU\|1\|a, 8G6W\|1\|a, 8G6X\|1\|a, 7S1H\|1\|I, 7S1G\|1\|I, 7QQ3\|1\|I, 4YBB\|1\|DA, 6PC6\|1\|I, 6PC7\|1\|I, 6PCR\|1\|I, 6PJ6\|1\|I, 6XZ7\|1\|A, 7BL4\|1\|A, 7K00\|1\|a, 7LVK\|1\|I, 7N1P\|1\|23, 7O1A\|1\|BA, 7PJS\|1\|A, 8G6Y\|1\|a	(0)	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_2.5_83717.114	NR_2.5_83717.115	3.282	(29) 4YBB\|1\|CA, 7S1I\|1\|I, 7S1J\|1\|I, 7S1K\|1\|I, 7Z20\|1\|b, 7ZP8\|1\|b, 8AKN\|1\|a, 8ANA\|1\|a, 8AYE\|1\|a, 8B0X\|1\|a, 8EIU\|1\|a, 8G6W\|1\|a, 8G6X\|1\|a, 7S1H\|1\|I, 7S1G\|1\|I, 7QQ3\|1\|I, 4YBB\|1\|DA, 6PC6\|1\|I, 6PC7\|1\|I, 6PCR\|1\|I, 6PJ6\|1\|I, 6XZ7\|1\|A, 7BL4\|1\|A, 7K00\|1\|a, 7LVK\|1\|I, 7N1P\|1\|23, 7O1A\|1\|BA, 7PJS\|1\|A, 8G6Y\|1\|a	(0)	(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	7ZP8\|1\|b	70S E. coli ribosome with a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.2	2901
2	7Z20\|1\|b	70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain	ELECTRON MICROSCOPY	2.29	2901
3	7O1A\|1\|BA	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.4	2874
4	8B0X\|1\|a	Translating 70S ribosome in the unrotated state (P and E, tRNAs)	ELECTRON MICROSCOPY	1.55	2724
5	7S1I\|1\|I	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.48	2874
6	7S1G\|1\|I	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.48	2874
7	7S1H\|1\|I	Wild-type Escherichia coli ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.35	2876
8	7S1K\|1\|I	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.42	2875
9	7S1J\|1\|I	Wild-type Escherichia coli ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.47	2876
10	7N1P\|1\|23	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	2882
11	8EIU\|1\|a	E. coli 70S ribosome with A-loop mutations U2554C and U2555C	ELECTRON MICROSCOPY	2.24	2729
12	8G6Y\|1\|a	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.09	2729
13	8G6W\|1\|a	Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.02	2732
14	8G6X\|1\|a	Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe	ELECTRON MICROSCOPY	2.31	2729
15	7K00\|1\|a	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	2729
16	8AYE\|1\|a	E. coli 70S ribosome bound to thermorubin and fMet-tRNA	ELECTRON MICROSCOPY	1.96	2731
17	7PJS\|1\|A	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	ELECTRON MICROSCOPY	2.35	2880
18	7BL4\|1\|A	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	ELECTRON MICROSCOPY	2.4	2897
19	7QQ3\|1\|I	Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.	ELECTRON MICROSCOPY	2.1	2880
20	6PC6\|1\|I	E. coli 50S ribosome bound to compound 47	ELECTRON MICROSCOPY	2.5	2876
21	6PCR\|1\|I	E. coli 50S ribosome bound to compound 40o	ELECTRON MICROSCOPY	2.5	2876
22	6PC7\|1\|I	E. coli 50S ribosome bound to compound 46	ELECTRON MICROSCOPY	2.5	2876
23	4YBB\|1\|CA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2876
24	7LVK\|1\|I	Cfr-modified 50S subunit from Escherichia coli	ELECTRON MICROSCOPY	2.2	2876
25	6PJ6\|1\|I	High resolution cryo-EM structure of E.coli 50S	ELECTRON MICROSCOPY	2.2	2874
26	8ANA\|1\|a	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit	ELECTRON MICROSCOPY	2.1	2714
27	8AKN\|1\|a	Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome	ELECTRON MICROSCOPY	2.3	2731
28	6XZ7\|1\|A	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	ELECTRON MICROSCOPY	2.1	2876
29	4YBB\|1\|DA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2883

Equivalence class NR_2.5_83717.114 Obsolete

Release history

Parents

Children