Equivalence class NR_20.0_37403.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6J9E|1|I (rep) | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 | Electron microscopy | 3.41 | 2019-07-17 | |||
| 2 | 6X50|1|R | RNA (20-mer) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - V state | Electron microscopy | 3.3 | 2021-02-03 | |||
| 3 | 6C6T|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | Electron microscopy | 3.5 | 2018-07-25 | |||
| 4 | 6J9F|1|I | RNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 | Electron microscopy | 3.95 | 2019-07-17 | |||
| 5 | 6X4Y|1|R | RNA (20-mer) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - IV state | Electron microscopy | 3.6 | 2021-02-03 | |||
| 6 | 6X43|1|R | RNA (20-mer) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - II state | Electron microscopy | 3.6 | 2021-02-03 | |||
| 7 | 6C6U|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | Electron microscopy | 3.7 | 2018-07-25 | |||
| 8 | 6C6S|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | Electron microscopy | 3.7 | 2018-07-25 | |||
| 9 | 6X4W|1|R | RNA (20-mer) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - III state | Electron microscopy | 3.8 | 2021-02-03 | |||
| 10 | 6X2N|1|R | RNA (20-MER) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - I state | Electron microscopy | 3.9 | 2021-02-03 | |||
| 11 | 6X2F|1|R | RNA (20-MER) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - L2 state | Electron microscopy | 4 | 2021-02-03 | |||
| 12 | 6X26|1|R | RNA (20-MER) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - L1 state | Electron microscopy | 4.1 | 2021-02-03 | |||
| 13 | 6ALH|1|R | RNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia virus T7 | CryoEM structure of E.coli RNA polymerase elongation complex | Electron microscopy | 4.4 | 2017-08-16 |
Release history
| Release | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 |
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| Date | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_37403.1 | NR_20.0_04731.2 | 3.164 | (3) 6J9F|1|I, 6J9E|1|I, 6ALH|1|R | (10) 6X50|1|R, 6X4Y|1|R, 6X4W|1|R, 6X43|1|R, 6X2N|1|R, 6X2F|1|R, 6X26|1|R, 6C6U|1|R, 6C6T|1|R, 6C6S|1|R | (0) |
| NR_20.0_37403.1 | NR_20.0_15897.1 | 3.164 | (3) 6C6S|1|R, 6C6U|1|R, 6C6T|1|R | (10) 6ALH|1|R, 6X50|1|R, 6X4Y|1|R, 6X4W|1|R, 6X43|1|R, 6X2N|1|R, 6X2F|1|R, 6X26|1|R, 6J9F|1|I, 6J9E|1|I | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6X43|1|R | Mfd-bound E.coli RNA polymerase elongation complex - II state | ELECTRON MICROSCOPY | 3.6 | 10 |
| 2 | 6C6S|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.7 | 10 |
| 3 | 6C6T|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.5 | 10 |
| 4 | 6C6U|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | ELECTRON MICROSCOPY | 3.7 | 10 |
| 5 | 6X50|1|R | Mfd-bound E.coli RNA polymerase elongation complex - V state | ELECTRON MICROSCOPY | 3.3 | 9 |
| 6 | 6X2N|1|R | Mfd-bound E.coli RNA polymerase elongation complex - I state | ELECTRON MICROSCOPY | 3.9 | 9 |
| 7 | 6X2F|1|R | Mfd-bound E.coli RNA polymerase elongation complex - L2 state | ELECTRON MICROSCOPY | 4 | 9 |
| 8 | 6ALH|1|R | CryoEM structure of E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 4.4 | 10 |
| 9 | 6X26|1|R | Mfd-bound E.coli RNA polymerase elongation complex - L1 state | ELECTRON MICROSCOPY | 4.1 | 9 |
| 10 | 6J9F|1|I | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.95 | 12 |
| 11 | 6J9E|1|I | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.41 | 12 |
| 12 | 6X4W|1|R | Mfd-bound E.coli RNA polymerase elongation complex - III state | ELECTRON MICROSCOPY | 3.8 | 9 |
| 13 | 6X4Y|1|R | Mfd-bound E.coli RNA polymerase elongation complex - IV state | ELECTRON MICROSCOPY | 3.6 | 10 |