Equivalence class NR_20.0_60049.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3CD6|1|4 (rep) | RNA (5'-R(*CP*CP*(PPU))-3') | Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin | X-ray diffraction | 2.75 | 2008-05-20 | ||||
| 2 | 3CMA|1|5 | RNA (5'-R(*CP*CP*A)-3') | The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui | X-ray diffraction | 2.8 | 2008-09-23 | ||||
| 3 | 6N9E|1|2w | CC-Pmn | Escherichia coli | Bacteria | Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution | X-ray diffraction | 3.7 | 2018-12-12 | ||
| 4 | 1VQO|1|4 | 5'-R(*CP*CP*(PPU))-3' | The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui | X-ray diffraction | 2.2 | 2005-11-29 | ||||
| 5 | 1QVG|1|3 | Oligonucleotide CCA | Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui | X-ray diffraction | 2.9 | 2003-11-11 | ||||
| 6 | 3CME|1|5 | RNA (5'-R(*C*CP*A)-3') | synthetic construct | Synthetic | The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui | X-ray diffraction | 2.95 | 2008-09-23 | ||
| 7 | 7Y38|1|Z | RNA (5'-R(P*CP*CP*A)-3') | in vitro transcription vector pT7-TP(deltai) | Molecular architecture of the chikungunya virus replication complex | Electron microscopy | 2.8 | 2022-12-14 | |||
| 8 | 5LZD|1|w | CCA 3' end of E-site tRNASec (low occupancy) | Escherichia coli | Bacteria | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | Electron microscopy | 3.4 | 2016-11-23 | ||
| 9 | 5LZE|1|w | CCA 3' end of E-site tRNASec (low occupancy) | Escherichia coli | Bacteria | Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) | Electron microscopy | 3.5 | 2016-11-23 | ||
| 10 | 5LZC|1|w | CCA 3' end of E-site tRNASec (low occupancy) | Escherichia coli | Bacteria | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR) | Electron microscopy | 4.8 | 2016-11-23 | ||
| 11 | 5LZB|1|w | CCA 3' end of E-site tRNASec (low occupancy) | Escherichia coli | Bacteria | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB) | Electron microscopy | 5.3 | 2016-11-23 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1VQO|1|4 | The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui | X-RAY DIFFRACTION | 2.2 | 2 |
| 2 | 3CD6|1|4 | Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin | X-RAY DIFFRACTION | 2.75 | 2 |
| 3 | 3CMA|1|5 | The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui | X-RAY DIFFRACTION | 2.8 | 3 |
| 4 | 3CME|1|5 | The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui | X-RAY DIFFRACTION | 2.95 | 2 |
| 5 | 1QVG|1|3 | Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui | X-RAY DIFFRACTION | 2.9 | 3 |
| 6 | 5LZC|1|w | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR) | ELECTRON MICROSCOPY | 4.8 | 3 |
| 7 | 5LZD|1|w | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA) | ELECTRON MICROSCOPY | 3.4 | 3 |
| 8 | 5LZE|1|w | Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C) | ELECTRON MICROSCOPY | 3.5 | 3 |
| 9 | 5LZB|1|w | Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB) | ELECTRON MICROSCOPY | 5.3 | 3 |
| 10 | 7Y38|1|Z | Molecular architecture of the chikungunya virus replication complex | ELECTRON MICROSCOPY | 2.8 | 3 |
| 11 | 6N9E|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution | X-RAY DIFFRACTION | 3.7 | 2 |