RNA 3D Hub //

Equivalence class NR_20.0_73286.18 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18C6J|1|5 (rep)U5 spliceosomal RNAU5 snRNA, PM5 5' ExonHomo sapiensEukaryaRF00020Human spliceosomal PM5 C* complexElectron microscopy2.82023-07-12
26QW6|1|5U5 spliceosomal RNAU5 snRNAHomo sapiensEukaryaRF00020Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution.Electron microscopy2.922019-04-17
37DVQ|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex)Electron microscopy2.892021-03-31
47QTT|1|eU5 spliceosomal RNAU5 snRNA, MINXHomo sapiensEukaryaRF00020Structural organization of a late activated human spliceosome (Baqr, core region)Electron microscopy3.12023-05-10
56QX9|1|5U5 spliceosomal RNAU5 snRNAHomo sapiensEukaryaRF00020Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).Electron microscopy3.282019-04-17
66QDV|1|5U5 spliceosomal RNAU5 snRNA, Ligated exons: MINX mRNAHomo sapiensEukaryaRF00020Human post-catalytic P complex spliceosomeElectron microscopy3.32019-02-20
76ZYM|1|5U5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Human C Complex Spliceosome - High-resolution COREElectron microscopy3.42020-10-14
86ICZ|1|BU5 spliceosomal RNAU5snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstromElectron microscopy32019-03-13
97W59|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020The cryo-EM structure of human pre-C*-I complexElectron microscopy3.62022-06-22
107W5A|1|BU5 spliceosomal RNAU5 snRNA, Pre-mRNAHomo sapiensEukaryaRF00020The cryo-EM structure of human pre-C*-II complexElectron microscopy3.62022-06-22
116FF4|1|5U5 spliceosomal RNAU5 snRNA, U2 snRNA, pre mRNAHomo sapiensEukaryaRF00020human Bact spliceosome core structureElectron microscopy3.42018-08-29
126ID0|1|BU5 spliceosomal RNAU5snRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolutionElectron microscopy2.92019-03-13
135XJC|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstromElectron microscopy3.62017-07-05
146ID1|1|BU5 spliceosomal RNAU5snRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolutionElectron microscopy2.862019-03-13
157W5B|1|BU5 spliceosomal RNAU5 snRNA, Pre-mRNAHomo sapiensEukaryaRF00020The cryo-EM structure of human C* complexElectron microscopy4.32022-06-22
167AAV|1|5U5 spliceosomal RNAU5 snRNA, MINX M3 pre-mRNAHomo sapiensEukaryaRF00020Human pre-Bact-2 spliceosome core structureElectron microscopy4.22020-12-09
175YZG|1|BU5 spliceosomal RNAU5 snRNA, Pre-mRNAHomo sapiensEukaryaRF00020The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolutionElectron microscopy4.12018-08-08
186AHD|1|BU5 spliceosomal RNAU5snRNA, pre-mRNAHomo sapiensEukaryaRF00020The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolutionElectron microscopy3.82018-11-14
195O9Z|1|5U5 spliceosomal RNAHomo sapiens U5 A small nuclear RNA, MINX pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)Electron microscopy4.52017-08-16
206FF7|1|5U5 spliceosomal RNAU5 snRNA, U2 snRNA, pre-mRNAHomo sapiensEukaryaRF00020human Bact spliceosome core structureElectron microscopy4.52019-03-13
217ABF|1|5U5 spliceosomal RNAU5 small nuclear RNA, MINX M3 RNAHomo sapiensEukaryaRF00020Human pre-Bact-1 spliceosome core structureElectron microscopy3.92020-12-09
225Z58|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.Electron microscopy4.92018-09-19
237A5P|1|5U5 spliceosomal RNAU5 snRNAHomo sapiensEukaryaRF00020Human C Complex Spliceosome - Medium-resolution PERIPHERYElectron microscopy52020-10-14
245Z56|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.Electron microscopy5.12018-09-19
258CH6|1|eU5 spliceosomal RNARNU5A-1, MINX-M3Homo sapiensEukaryaRF00020Structure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).Electron microscopy5.92023-05-10
266AH0|1|BU5 spliceosomal RNAU5snRNAHomo sapiensEukaryaRF00020The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex)Electron microscopy5.72018-11-14
275MQF|1|5U5 spliceosomal RNAHomo sapiens U5 A small nuclear RNA, MINX pre-mRNA (intron)Homo sapiensEukaryaRF00020Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)Electron microscopy5.92017-03-22
285Z57|1|BU5 spliceosomal RNAU5 snRNA, pre-mRNAHomo sapiensEukaryaRF00020Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstromElectron microscopy6.52018-09-19
293JCR|1|HU5 spliceosomal RNAU5 snRNAHomo sapiensEukaryaRF000203D structure determination of the human*U4/U6.U5* tri-snRNP complexElectron microscopy72016-03-09
307ABG|1|5U5 spliceosomal RNAU5 snRNA, MINX M3 pre-mRNAHomo sapiensEukaryaRF00020Human pre-Bact-1 spliceosomeElectron microscopy7.82020-12-23
317ABI|1|5U5 spliceosomal RNAU5 snRNA, MINX M3 pre-mRNAHomo sapiensEukaryaRF00020Human pre-Bact-2 spliceosomeElectron microscopy82021-02-10

Release history

Release3.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.318
Date2023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-17

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_73286.18NR_20.0_73286.173.291(30) 7W59|1|B, 7QTT|1|e, 7DVQ|1|B, 7ABI|1|5, 7ABG|1|5, 7ABF|1|5, 7AAV|1|5, 7A5P|1|5, 6ZYM|1|5, 6QX9|1|5, 6QW6|1|5, 6QDV|1|5, 6ID1|1|B, 6ID0|1|B, 6ICZ|1|B, 6FF7|1|5, 6FF4|1|5, 6AHD|1|B, 6AH0|1|B, 5Z58|1|B, 5Z57|1|B, 5Z56|1|B, 5YZG|1|B, 5XJC|1|B, 5O9Z|1|5, 5MQF|1|5, 3JCR|1|H, 8CH6|1|e, 7W5B|1|B, 7W5A|1|B(1) 8C6J|1|5(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15Z58|1|BCryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.ELECTRON MICROSCOPY4.984
25Z56|1|Bcryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.ELECTRON MICROSCOPY5.184
35Z57|1|BCryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstromELECTRON MICROSCOPY6.584
45YZG|1|BThe Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolutionELECTRON MICROSCOPY4.184
55XJC|1|BCryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstromELECTRON MICROSCOPY3.684
67W59|1|BThe cryo-EM structure of human pre-C*-I complexELECTRON MICROSCOPY3.684
77W5A|1|BThe cryo-EM structure of human pre-C*-II complexELECTRON MICROSCOPY3.684
87W5B|1|BThe cryo-EM structure of human C* complexELECTRON MICROSCOPY4.384
96ID1|1|BCryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolutionELECTRON MICROSCOPY2.8698
106ID0|1|BCryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolutionELECTRON MICROSCOPY2.998
116ICZ|1|BCryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstromELECTRON MICROSCOPY397
127DVQ|1|BCryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex)ELECTRON MICROSCOPY2.8990
136QDV|1|5Human post-catalytic P complex spliceosomeELECTRON MICROSCOPY3.375
148C6J|1|5Human spliceosomal PM5 C* complexELECTRON MICROSCOPY2.8113
156QX9|1|5Structure of a human fully-assembled precatalytic spliceosome (pre-B complex).ELECTRON MICROSCOPY3.28104
166QW6|1|5Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution.ELECTRON MICROSCOPY2.92104
177QTT|1|eStructural organization of a late activated human spliceosome (Baqr, core region)ELECTRON MICROSCOPY3.198
188CH6|1|eStructure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).ELECTRON MICROSCOPY5.998
196ZYM|1|5Human C Complex Spliceosome - High-resolution COREELECTRON MICROSCOPY3.474
206FF4|1|5human Bact spliceosome core structureELECTRON MICROSCOPY3.470
216FF7|1|5human Bact spliceosome core structureELECTRON MICROSCOPY4.570
227AAV|1|5Human pre-Bact-2 spliceosome core structureELECTRON MICROSCOPY4.269
237ABF|1|5Human pre-Bact-1 spliceosome core structureELECTRON MICROSCOPY3.958
247ABG|1|5Human pre-Bact-1 spliceosomeELECTRON MICROSCOPY7.8114
257ABI|1|5Human pre-Bact-2 spliceosomeELECTRON MICROSCOPY8114
267A5P|1|5Human C Complex Spliceosome - Medium-resolution PERIPHERYELECTRON MICROSCOPY540
275MQF|1|5Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)ELECTRON MICROSCOPY5.9114
285O9Z|1|5Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)ELECTRON MICROSCOPY4.5114
296AH0|1|BThe Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex)ELECTRON MICROSCOPY5.7115
306AHD|1|BThe Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolutionELECTRON MICROSCOPY3.8115
313JCR|1|H3D structure determination of the human*U4/U6.U5* tri-snRNP complexELECTRON MICROSCOPY763
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