Equivalence class NR_20.0_91124.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5NEP|1|A (rep) | RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | Gloeobacter violaceus | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with methylguanidine | X-ray diffraction | 1.6 | 2017-05-31 | |||
| 2 | 5NEX|1|A | RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | Gloeobacter violaceus | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with agmatine | X-ray diffraction | 1.72 | 2017-05-31 | |||
| 3 | 5NEO|1|A | RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | Gloeobacter violaceus | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop | X-ray diffraction | 1.69 | 2017-05-31 | |||
| 4 | 5NEQ|1|A | RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | Gloeobacter violaceus | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with aminoguanidine | X-ray diffraction | 1.69 | 2017-05-31 | |||
| 5 | 5NEF|1|A | RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | Gloeobacter violaceus | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine | X-ray diffraction | 1.91 | 2017-06-07 | |||
| 6 | 5NOM|1|A | RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | Gloeobacter violaceus | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine | X-ray diffraction | 1.93 | 2017-05-31 |
Release history
| Release | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 | 2018-06-01 | 2018-06-08 | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5NEX|1|A | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with agmatine | X-RAY DIFFRACTION | 1.72 | 17 |
| 2 | 5NOM|1|A | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine | X-RAY DIFFRACTION | 1.93 | 17 |
| 3 | 5NEF|1|A | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine | X-RAY DIFFRACTION | 1.91 | 17 |
| 4 | 5NEP|1|A | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with methylguanidine | X-RAY DIFFRACTION | 1.6 | 17 |
| 5 | 5NEQ|1|A | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with aminoguanidine | X-RAY DIFFRACTION | 1.69 | 17 |
| 6 | 5NEO|1|A | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop | X-RAY DIFFRACTION | 1.69 | 17 |
Coloring options: