Equivalence class NR_3.0_12260.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3UCZ|1|R (rep) | RNA (92-MER), RNA (5'-R(*GP*G)-3') | The c-di-GMP-I riboswitch bound to GpG | X-ray diffraction | 2.8 | 2012-01-04 | ||||
| 2 | 3UCU|1|R | RNA (92-MER), diguanosine monophosphate | The c-di-GMP-I riboswitch bound to pGpG | X-ray diffraction | 2.8 | 2012-01-04 | ||||
| 3 | 3MXH|1|R | c-di-GMP riboswitch | Native structure of a c-di-GMP riboswitch from V. cholerae | X-ray diffraction | 2.3 | 2010-08-25 | ||||
| 4 | 3MUR|1|R | C92U mutant c-di-GMP riboswitch | Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP | X-ray diffraction | 3 | 2010-08-25 | ||||
| 5 | 3UD4|1|R | RNA (92-MER), RNA (5'-R(*GP*A)-3') | The C92U mutant c-di-GMP-I riboswitch bound to GpA | X-ray diffraction | 2.7 | 2012-01-04 | ||||
| 6 | 3MUM|1|R | G20A mutant c-di-GMP Riboswitch | Crystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMP | X-ray diffraction | 2.9 | 2010-08-25 | ||||
| 7 | 3IRW|1|R | Cyclic di-GMP-I riboswitch | c-di-GMP Riboswitch | Vibrio cholerae | Bacteria | RF01051 | Structure of a c-di-GMP riboswitch from V. cholerae | X-ray diffraction | 2.7 | 2009-11-10 |
| 8 | 3MUT|1|R | G20A/C92U mutant c-di-GMP riboswitch | Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMP | X-ray diffraction | 3 | 2010-08-25 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3MXH|1|R | Native structure of a c-di-GMP riboswitch from V. cholerae | X-RAY DIFFRACTION | 2.3 | 91 |
| 2 | 3MUM|1|R | Crystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMP | X-RAY DIFFRACTION | 2.9 | 91 |
| 3 | 3UCZ|1|R | The c-di-GMP-I riboswitch bound to GpG | X-RAY DIFFRACTION | 2.8 | 91 |
| 4 | 3MUR|1|R | Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP | X-RAY DIFFRACTION | 3 | 91 |
| 5 | 3MUT|1|R | Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMP | X-RAY DIFFRACTION | 3 | 91 |
| 6 | 3UCU|1|R | The c-di-GMP-I riboswitch bound to pGpG | X-RAY DIFFRACTION | 2.8 | 91 |
| 7 | 3UD4|1|R | The C92U mutant c-di-GMP-I riboswitch bound to GpA | X-RAY DIFFRACTION | 2.7 | 91 |
| 8 | 3IRW|1|R | Structure of a c-di-GMP riboswitch from V. cholerae | X-RAY DIFFRACTION | 2.7 | 90 |