Equivalence class NR_3.0_56726.31 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 5J7L|1|AA (rep) | 16S rRNA | Escherichia coli | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 2016-07-27 |
| 2 | 4YBB|1|AA | 16S rRNA | Escherichia coli | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 2015-03-18 |
| 3 | 4WOI|1|DA | 16S ribosomal RNA, Messenger RNA | Escherichia coli | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 2015-08-05 |
| 4 | 4WOI|1|AA | 16S ribosomal RNA, Messenger RNA | Escherichia coli | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 2015-08-05 |
| 5 | 4V9P|1|FA | 16S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 6 | 4V9O|1|BA | 16S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 7 | 5J7L|1|BA | 16S rRNA | Escherichia coli | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 2016-07-27 |
| 8 | 4V9P|1|HA | 16S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 9 | 4V9P|1|DA | 16S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 10 | 4V9P|1|BA | 16S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 11 | 4V9O|1|FA | 16S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 12 | 5J91|1|AA | 16S rRNA | Escherichia coli | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 2016-07-06 |
| 13 | 4V9O|1|DA | 16S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 14 | 4U27|1|AA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 2014-07-30 |
| 15 | 4YBB|1|BA | 16S rRNA | Escherichia coli | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 2015-03-18 |
| 16 | 4U1U|1|AA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 2014-07-30 |
| 17 | 4U26|1|AA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 2014-07-30 |
| 18 | 4V9D|1|AA | 16S rRNA, messenger RNA | Escherichia coli | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 2014-07-09 |
| 19 | 4U24|1|AA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 2014-07-30 |
| 20 | 4U25|1|AA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 2014-07-30 |
| 21 | 4V9D|1|BA | 16S rRNA, messenger RNA | Escherichia coli | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 2014-07-09 |
| 22 | 4U27|1|CA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 2014-07-30 |
| 23 | 4V9O|1|HA | 16S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 24 | 4U20|1|AA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 2014-07-30 |
| 25 | 4U1U|1|CA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 2014-07-30 |
| 26 | 4U1V|1|AA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 2014-07-30 |
| 27 | 4U25|1|CA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 2014-07-30 |
| 28 | 4U26|1|CA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 2014-07-30 |
| 29 | 5J91|1|BA | 16S rRNA | Escherichia coli | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 2016-07-06 |
| 30 | 4U24|1|CA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 2014-07-30 |
| 31 | 4U1V|1|CA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 2014-07-30 |
| 32 | 4U20|1|CA | 16S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 2014-07-30 |
| 33 | 5J5B|1|AA | 16S rRNA | Escherichia coli | Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 2016-07-27 |
| 34 | 5J5B|1|BA | 16S rRNA | Escherichia coli | Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 2016-07-27 |
| 35 | 5AFI|1|a | 16S ribosomal RNA | Escherichia coli | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 2015-03-11 |
| 36 | 5NWY|1|0 | 16S rRNA | Escherichia coli | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | ELECTRON MICROSCOPY | 2.9 | 2017-07-19 |
| 37 | 3R8O|1|A | 16S rRNA, messenger RNA | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 2011-06-01 | |
| 38 | 3R8N|1|A | 16S rRNA, messenger RNA | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 2011-06-01 | |
| 39 | 5MDV|1|2 | 16S ribosomal RNA | Escherichia coli | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | ELECTRON MICROSCOPY | 2.97 | 2016-12-14 |
| 40 | 5IQR|1|2 | SSU rRNA | Escherichia coli | Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 2016-05-04 |
Release history
| Release | 3.9 |
|---|---|
| Date | 2018-02-16 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_56726.31 | NR_3.0_56726.30 | 3.9 | (40) 3R8N|1|A, 4YBB|1|AA, 4WOI|1|DA, 4WOI|1|AA, 4V9P|1|HA, 4V9P|1|FA, 4V9P|1|DA, 4V9P|1|BA, 4V9O|1|HA, 4YBB|1|BA, 5AFI|1|a, 5MDV|1|2, 5J91|1|BA, 5J91|1|AA, 5J7L|1|BA, 5J7L|1|AA, 5J5B|1|BA, 5J5B|1|AA, 5IQR|1|2, 4V9O|1|FA, 4V9O|1|DA, 4U24|1|AA, 4U20|1|CA, 4U20|1|AA, 4U1V|1|CA, 4U1V|1|AA, 4U1U|1|CA, 4U1U|1|AA, 3R8O|1|A, 4U24|1|CA, 4U25|1|AA, 4V9O|1|BA, 4V9D|1|BA, 4V9D|1|AA, 4U27|1|CA, 4U27|1|AA, 4U26|1|CA, 4U26|1|AA, 4U25|1|CA, 5NWY|1|0 | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_56726.31 | NR_3.0_56726.32 | 3.10 | (40) 3R8N|1|A, 4YBB|1|AA, 4WOI|1|DA, 4WOI|1|AA, 4V9P|1|HA, 4V9P|1|FA, 4V9P|1|DA, 4V9P|1|BA, 4V9O|1|HA, 4YBB|1|BA, 5AFI|1|a, 5MDV|1|2, 5J91|1|BA, 5J91|1|AA, 5J7L|1|BA, 5J7L|1|AA, 5J5B|1|BA, 5J5B|1|AA, 5IQR|1|2, 4V9O|1|FA, 4V9O|1|DA, 4U24|1|AA, 4U20|1|CA, 4U20|1|AA, 4U1V|1|CA, 4U1V|1|AA, 4U1U|1|CA, 4U1U|1|AA, 3R8O|1|A, 4U24|1|CA, 4U25|1|AA, 4V9O|1|BA, 4V9D|1|BA, 4V9D|1|AA, 4U27|1|CA, 4U27|1|AA, 4U26|1|CA, 4U26|1|AA, 4U25|1|CA, 5NWY|1|0 | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4V9P|1|FA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 |
| 2 | 4V9P|1|HA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 |
| 3 | 4V9O|1|HA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 |
| 4 | 4V9P|1|BA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 |
| 5 | 4V9P|1|DA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 |
| 6 | 4V9O|1|DA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 |
| 7 | 4U1U|1|AA | Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 1538 |
| 8 | 4U20|1|AA | Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 1538 |
| 9 | 4U1V|1|AA | Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 1538 |
| 10 | 4U27|1|AA | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 1538 |
| 11 | 4U25|1|AA | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 1538 |
| 12 | 4U26|1|AA | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 1538 |
| 13 | 4U24|1|AA | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 1538 |
| 14 | 4YBB|1|AA | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 1523 |
| 15 | 5J91|1|AA | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 1523 |
| 16 | 5J5B|1|AA | Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 1523 |
| 17 | 5J7L|1|AA | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 1523 |
| 18 | 5J7L|1|BA | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 1522 |
| 19 | 5J91|1|BA | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 1522 |
| 20 | 5J5B|1|BA | Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 1522 |
| 21 | 4YBB|1|BA | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 1522 |
| 22 | 4U24|1|CA | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 1539 |
| 23 | 4U26|1|CA | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 1539 |
| 24 | 4U25|1|CA | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 1539 |
| 25 | 4U27|1|CA | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 1539 |
| 26 | 4U1V|1|CA | Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 1539 |
| 27 | 4U20|1|CA | Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 1539 |
| 28 | 4U1U|1|CA | Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 1539 |
| 29 | 4V9O|1|FA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 |
| 30 | 4V9O|1|BA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 1533 |
| 31 | 3R8N|1|A | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 1538 |
| 32 | 4V9D|1|AA | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 1538 |
| 33 | 5NWY|1|0 | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | ELECTRON MICROSCOPY | 2.9 | 1539 |
| 34 | 5MDV|1|2 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | ELECTRON MICROSCOPY | 2.97 | 1523 |
| 35 | 5IQR|1|2 | Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 1522 |
| 36 | 4V9D|1|BA | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 1539 |
| 37 | 3R8O|1|A | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 1539 |
| 38 | 4WOI|1|DA | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 1539 |
| 39 | 5AFI|1|a | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 1528 |
| 40 | 4WOI|1|AA | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 1538 |