#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15J7L|1|DB (rep)5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction32016-07-27
25JC9|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-ray diffraction3.032016-07-06
35J8A|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-ray diffraction3.12016-07-06
44YBB|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
56I7V|1|DB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Ribosomal protein paralogs bL31 and bL36X-ray diffraction2.92018-12-05
64WOI|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000014,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
75IT8|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction3.122016-07-27
85J91|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
94U27|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
105J88|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.322016-07-06
114WF1|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to negamycin.X-ray diffraction3.092014-11-05
124WOI|1|CB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000014,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
134V9D|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
144V9P|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
154V9P|1|EB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
164U24|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
174V9O|1|AB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
184WWW|1|RB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to CEM-101X-ray diffraction3.12014-12-24
194U26|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
204V9P|1|GB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
214V7T|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to chloramphenicol.X-ray diffraction3.192014-07-09
224V9O|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
234V6C|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.192014-07-09
244U25|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
254V9O|1|EB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
264V9P|1|AB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
274U1U|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
286LKQ|1|u5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001The Structural Basis for Inhibition of Ribosomal Translocation by ViomycinX-ray diffraction3.12020-05-06
294V7U|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to erythromycin.X-ray diffraction3.12014-07-09
304U20|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
314V7V|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to clindamycin.X-ray diffraction3.292014-07-09
324V9C|1|DB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.32014-07-09
334U1V|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
344V52|1|BA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-ray diffraction3.212014-07-09
355J7L|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction32016-07-27
364V52|1|DA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-ray diffraction3.212014-07-09
374V7S|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to telithromycin.X-ray diffraction3.252014-07-09
385J8A|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-ray diffraction3.12016-07-06
394V9D|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
404V50|1|DA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
415JC9|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-ray diffraction3.032016-07-06
424V85|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-ray diffraction3.22014-07-09
436I7V|1|CB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Ribosomal protein paralogs bL31 and bL36X-ray diffraction2.92018-12-05
444V57|1|DA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-ray diffraction3.52014-07-09
454V64|1|DA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-ray diffraction3.52014-07-09
464V64|1|BA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-ray diffraction3.52014-07-09
474V57|1|BA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-ray diffraction3.52014-07-09
484V54|1|BA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-ray diffraction3.32014-07-09
494V54|1|DA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-ray diffraction3.32014-07-09
504V9O|1|GB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
514U27|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
524WF1|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to negamycin.X-ray diffraction3.092014-11-05
535J88|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.322016-07-06
544U25|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
554V4Q|1|BA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
564U1V|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
574V50|1|BA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
584V4Q|1|DA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
594YBB|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
604U26|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
614U1U|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
624V9C|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.32014-07-09
634V7T|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to chloramphenicol.X-ray diffraction3.192014-07-09
644U20|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
655IT8|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction3.122016-07-27
664U24|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
674WWW|1|YB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to CEM-101X-ray diffraction3.12014-12-24
685J91|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
694V6C|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.192014-07-09
704V7V|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to clindamycin.X-ray diffraction3.292014-07-09
714V7S|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to telithromycin.X-ray diffraction3.252014-07-09
724V7U|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to erythromycin.X-ray diffraction3.12014-07-09
735J5B|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.82016-07-27
744V4H|1|BA5S ribosomal RNA5S RIBOSOMAL RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-ray diffraction3.462014-07-09
754V4H|1|DA5S ribosomal RNA5S RIBOSOMAL RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-ray diffraction3.462014-07-09
765J5B|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.82016-07-27
777K00|1|b5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Bacterial Ribosome at 2 Angstrom ResolutionElectron microscopy1.982020-09-23
786XZ7|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).Electron microscopy2.12020-07-22
796PJ6|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High resolution cryo-EM structure of E.coli 50SElectron microscopy2.22020-01-22
806XZB|1|B25S ribosomal RNA5S rRNAEscherichia coli K-12BacteriaRF00001E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).Electron microscopy2.542020-11-04
816YSS|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis stateElectron microscopy2.62020-08-19
826PC6|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 47Electron microscopy2.52020-06-17
836PCR|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 40oElectron microscopy2.52020-06-17
846PC7|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 46Electron microscopy2.52020-06-17
856YS3|1|a5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptideElectron microscopy2.582020-09-30
866TBV|1|05S15S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)Electron microscopy2.72020-01-01
876TC3|1|05S15S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)Electron microscopy2.72020-01-01
886XZA|1|B25S ribosomal RNA5S rRNAEscherichia coli K-12BacteriaRF00001E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).Electron microscopy2.662020-11-04
896PCQ|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to VM2Electron microscopy2.62020-06-17
906PC5|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compounds 46 and VS1Electron microscopy2.72020-06-17
916QDW|1|a5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptideElectron microscopy2.832020-01-15
925AFI|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000012.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
936Y69|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinXElectron microscopy2.862020-07-01
946ORE|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Release complex 70SElectron microscopy2.92019-06-19
956PCT|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 41qElectron microscopy2.82020-06-17
966WYV|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compounds 47 and VS1Electron microscopy2.752020-06-17
976U48|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001E. coli 50S with phazolicin (PHZ) bound in exit tunnelElectron microscopy2.872019-09-18
985NWY|1|O5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF000012.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexElectron microscopy2.92017-07-19
995MDV|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)Electron microscopy2.972016-12-14
1006ZTO|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 70S-RNAP expressome complex in uncoupled state 1Electron microscopy32020-09-23
1016ZTP|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 70S-RNAP expressome complex in uncoupled state 6Electron microscopy32020-09-16
1026ZU1|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 70S-RNAP expressome complex in uncoupled state 2Electron microscopy32020-09-16
1036WDE|1|25S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)Electron microscopy32020-07-01
1046PCS|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 40eElectron microscopy2.82020-06-17
1055H5U|1|B5S ribosomal RNA5S Ribosomal RNAEscherichia coliBacteriaRF00001Mechanistic insights into the alternative translation termination by ArfA and RF2Electron microscopy3.012017-01-25
1066WD0|1|25S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)Electron microscopy32020-07-01
1076HRM|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 70S d2d8 stapled ribosomeElectron microscopy2.962018-12-19
1086PC8|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 40qElectron microscopy2.92020-06-17
1096H4N|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeElectron microscopy32018-09-05
1106QUL|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolidElectron microscopy32019-04-10
1116SZS|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilisElectron microscopy3.062019-12-04
1126PCH|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 21Electron microscopy2.92020-06-17
1135WFS|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF0000170S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)Electron microscopy32018-05-02
1145MDZ|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of the 70S ribosome (empty A site)Electron microscopy3.12016-12-14
1156S0K|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Ribosome nascent chain in complex with SecAElectron microscopy3.12019-10-09
1166YSR|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of the P+9 stalled ribosome complexElectron microscopy3.12020-08-19
1176X7K|1|d5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-siteElectron microscopy3.12020-09-02
1186ENU|1|B5S ribosomal RNA5S Ribosomal RNAEscherichia coliBacteriaRF00001Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)Electron microscopy3.12017-11-22
1195MDW|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)Electron microscopy3.062016-12-14
1205MGP|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsElectron microscopy3.12016-12-14
1216VWL|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF0000170S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)Electron microscopy3.12020-06-03
1226X6T|1|d5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-siteElectron microscopy3.22020-09-02
1236YST|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis stateElectron microscopy3.22020-08-19
1246ENF|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PElectron microscopy3.22017-11-22
1256WDD|1|25S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A)Electron microscopy3.22020-07-01
1265U9G|1|025S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000013.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)Electron microscopy3.22017-03-22
1275U9F|1|025S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000013.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)Electron microscopy3.22017-03-22
1285UYM|1|025S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF0000170S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)Electron microscopy3.22017-06-07
1296C4I|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Conformation of methylated GGQ in the peptidyl transferase center during translation terminationElectron microscopy3.242018-02-21
1305WDT|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF0000170S ribosome-EF-Tu H84A complex with GppNHpElectron microscopy32018-04-25
1317JT1|1|25S ribosomal RNA5S ribosomal RNAEscherichia coli K-12BacteriaRF0000170S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)Electron microscopy3.32020-11-11
1326WDF|1|25S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)Electron microscopy3.32020-07-01
1336WDG|1|25S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)Electron microscopy3.32020-07-01
1346OG7|1|25S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF0000170S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)Electron microscopy3.32019-09-25
1356WD1|1|25S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B)Electron microscopy3.32020-07-01
1367BV8|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Mature 50S ribosomal subunit from RrmJ knock out E.coli strainElectron microscopy3.142020-07-01
1375WE4|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF0000170S ribosome-EF-Tu wt complex with GppNHpElectron microscopy3.12018-04-25
1386OFX|1|25S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Non-rotated ribosome (Structure I)Electron microscopy3.32019-09-25
1393JBV|1|a5S ribosomal RNARNA (118-MER)Escherichia coliBacteriaRF00001Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.322016-01-27
1405GAE|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001RNC in complex with a translocating SecYEGElectron microscopy3.332016-01-27
1416I0Y|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnelElectron microscopy3.22018-12-05
1425MDY|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)Electron microscopy3.352016-12-21
1435WFK|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF0000170S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)Electron microscopy3.42018-05-02
1445LZD|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)Electron microscopy3.42016-11-23
1456OGI|1|25S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF0000170S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)Electron microscopy3.42019-09-25
1463JCE|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)Electron microscopy3.22016-01-13
1476ZTM|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 70S-RNAP expressome complex in collided state without NusGElectron microscopy3.32020-09-16
1485O2R|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosomeElectron microscopy3.42017-07-26
1496ZTJ|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)Electron microscopy3.42020-09-16
1506X7F|1|d5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-siteElectron microscopy3.52020-09-02
1517JT2|1|25S ribosomal RNA5S ribosomal RNAEscherichia coli K-12BacteriaRF0000170S ribosome stalled on long mRNA with ArfB bound in the A siteElectron microscopy3.52020-11-11
1525LZE|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)Electron microscopy3.52016-11-23
1536BU8|1|025S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF0000170S ribosome with S1 domains 1 and 2 (Class 1)Electron microscopy3.52018-01-31
1546VWM|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF0000170S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)Electron microscopy3.42020-06-03
1556OSQ|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001RF1 accommodated state bound Release complex 70S at long incubation time pointElectron microscopy3.52019-06-26
1566VWN|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF0000170S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)Electron microscopy3.42020-06-03
1575U4I|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to RibosomeElectron microscopy3.52017-01-11
1586ORL|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001RF1 pre-accommodated 70S complex at 24 msElectron microscopy3.52019-06-19
1595WE6|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF0000170S ribosome-EF-Tu H84A complex with GTP and cognate tRNAElectron microscopy3.42018-04-25
1605IQR|1|35S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of RelA bound to the 70S ribosomeElectron microscopy32016-05-04
1616ZTL|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 70S-RNAP expressome complex in collided state bound to NusGElectron microscopy3.52020-09-16

Release history

Release3.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.164
Date2020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_10157.70NR_3.5_10157.693.152(159) 3JBV|1|a, 3JCE|1|B, 4U1U|1|BB, 4U1U|1|DB, 4U1V|1|BB, 4U1V|1|DB, 4U20|1|BB, 4U20|1|DB, 4U24|1|BB, 4U24|1|DB, 4U25|1|BB, 4U25|1|DB, 4U26|1|BB, 4U26|1|DB, 4U27|1|BB, 4U27|1|DB, 4V4H|1|BA, 4V4H|1|DA, 4V4Q|1|BA, 4V4Q|1|DA, 4V50|1|BA, 4V50|1|DA, 4V52|1|BA, 4V52|1|DA, 4V54|1|BA, 4V54|1|DA, 4V57|1|BA, 4V57|1|DA, 4V64|1|BA, 4V64|1|DA, 4V6C|1|BB, 4V6C|1|DB, 4V7S|1|BB, 4V7S|1|DB, 4V7T|1|BB, 4V7T|1|DB, 4V7U|1|BB, 4V7U|1|DB, 4V7V|1|BB, 4V7V|1|DB, 4V85|1|BB, 4V9C|1|BB, 4V9C|1|DB, 4V9D|1|CB, 4V9D|1|DB, 4V9O|1|AB, 4V9O|1|CB, 4V9O|1|EB, 4V9O|1|GB, 4V9P|1|AB, 4V9P|1|CB, 4V9P|1|EB, 4V9P|1|GB, 4WF1|1|BB, 4WF1|1|DB, 4WOI|1|BB, 4WOI|1|CB, 4WWW|1|RB, 4WWW|1|YB, 4YBB|1|CB, 4YBB|1|DB, 5AFI|1|B, 5GAE|1|B, 5H5U|1|B, 5IQR|1|3, 5IT8|1|CB, 5IT8|1|DB, 5J5B|1|CB, 5J5B|1|DB, 5J7L|1|CB, 5J7L|1|DB, 5J88|1|CB, 5J88|1|DB, 5J8A|1|CB, 5J8A|1|DB, 5J91|1|CB, 5J91|1|DB, 5JC9|1|CB, 5JC9|1|DB, 5LZD|1|B, 5LZE|1|B, 5MDV|1|3, 5MDW|1|3, 5MDY|1|3, 5MDZ|1|3, 5MGP|1|B, 5NWY|1|O, 5O2R|1|B, 5U4I|1|B, 5U9F|1|02, 5U9G|1|02, 5UYM|1|02, 5WDT|1|B, 5WE4|1|B, 5WE6|1|B, 5WFK|1|B, 5WFS|1|B, 6BU8|1|02, 6C4I|1|B, 6ENF|1|B, 6ENU|1|B, 6H4N|1|B, 6HRM|1|3, 6I0Y|1|B, 6I7V|1|CB, 6I7V|1|DB, 6LKQ|1|u, 6OFX|1|2, 6OG7|1|2, 6OGI|1|2, 6ORE|1|3, 6ORL|1|3, 6OSQ|1|3, 6PC5|1|J, 6PC6|1|J, 6PC7|1|J, 6PC8|1|J, 6PCH|1|J, 6PCQ|1|J, 6PCR|1|J, 6PCS|1|J, 6PCT|1|J, 6PJ6|1|J, 6QDW|1|a, 6QUL|1|B, 6S0K|1|B, 6SZS|1|B, 6TBV|1|05S1, 6TC3|1|05S1, 6U48|1|CB, 6VWL|1|3, 6VWM|1|3, 6VWN|1|3, 6WD0|1|2, 6WD1|1|2, 6WDD|1|2, 6WDE|1|2, 6WDF|1|2, 6WDG|1|2, 6WYV|1|J, 6X6T|1|d, 6X7F|1|d, 6X7K|1|d, 6XZ7|1|B, 6XZA|1|B2, 6XZB|1|B2, 6Y69|1|B, 6YS3|1|a, 6YSR|1|B, 6YSS|1|B, 6YST|1|B, 6ZTJ|1|BB, 6ZTL|1|BB, 6ZTM|1|BB, 6ZTO|1|BB, 6ZTP|1|BB, 6ZU1|1|BB, 7BV8|1|B, 7K00|1|b(2) 7JT1|1|2, 7JT2|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_10157.70NR_3.5_10157.713.165(161) 3JBV|1|a, 3JCE|1|B, 4U1U|1|BB, 4U1U|1|DB, 4U1V|1|BB, 4U1V|1|DB, 4U20|1|BB, 4U20|1|DB, 4U24|1|BB, 4U24|1|DB, 4U25|1|BB, 4U25|1|DB, 4U26|1|BB, 4U26|1|DB, 4U27|1|BB, 4U27|1|DB, 4V4H|1|BA, 4V4H|1|DA, 4V4Q|1|BA, 4V4Q|1|DA, 4V50|1|BA, 4V50|1|DA, 4V52|1|BA, 4V52|1|DA, 4V54|1|BA, 4V54|1|DA, 4V57|1|BA, 4V57|1|DA, 4V64|1|BA, 4V64|1|DA, 4V6C|1|BB, 4V6C|1|DB, 4V7S|1|BB, 4V7S|1|DB, 4V7T|1|BB, 4V7T|1|DB, 4V7U|1|BB, 4V7U|1|DB, 4V7V|1|BB, 4V7V|1|DB, 4V85|1|BB, 4V9C|1|BB, 4V9C|1|DB, 4V9D|1|CB, 4V9D|1|DB, 4V9O|1|AB, 4V9O|1|CB, 4V9O|1|EB, 4V9O|1|GB, 4V9P|1|AB, 4V9P|1|CB, 4V9P|1|EB, 4V9P|1|GB, 4WF1|1|BB, 4WF1|1|DB, 4WOI|1|BB, 4WOI|1|CB, 4WWW|1|RB, 4WWW|1|YB, 4YBB|1|CB, 4YBB|1|DB, 5AFI|1|B, 5GAE|1|B, 5H5U|1|B, 5IQR|1|3, 5IT8|1|CB, 5IT8|1|DB, 5J5B|1|CB, 5J5B|1|DB, 5J7L|1|CB, 5J7L|1|DB, 5J88|1|CB, 5J88|1|DB, 5J8A|1|CB, 5J8A|1|DB, 5J91|1|CB, 5J91|1|DB, 5JC9|1|CB, 5JC9|1|DB, 5LZD|1|B, 5LZE|1|B, 5MDV|1|3, 5MDW|1|3, 5MDY|1|3, 5MDZ|1|3, 5MGP|1|B, 5NWY|1|O, 5O2R|1|B, 5U4I|1|B, 5U9F|1|02, 5U9G|1|02, 5UYM|1|02, 5WDT|1|B, 5WE4|1|B, 5WE6|1|B, 5WFK|1|B, 5WFS|1|B, 6BU8|1|02, 6C4I|1|B, 6ENF|1|B, 6ENU|1|B, 6H4N|1|B, 6HRM|1|3, 6I0Y|1|B, 6I7V|1|CB, 6I7V|1|DB, 6LKQ|1|u, 6OFX|1|2, 6OG7|1|2, 6OGI|1|2, 6ORE|1|3, 6ORL|1|3, 6OSQ|1|3, 6PC5|1|J, 6PC6|1|J, 6PC7|1|J, 6PC8|1|J, 6PCH|1|J, 6PCQ|1|J, 6PCR|1|J, 6PCS|1|J, 6PCT|1|J, 6PJ6|1|J, 6QDW|1|a, 6QUL|1|B, 6S0K|1|B, 6SZS|1|B, 6TBV|1|05S1, 6TC3|1|05S1, 6U48|1|CB, 6VWL|1|3, 6VWM|1|3, 6VWN|1|3, 6WD0|1|2, 6WD1|1|2, 6WDD|1|2, 6WDE|1|2, 6WDF|1|2, 6WDG|1|2, 6WYV|1|J, 6X6T|1|d, 6X7F|1|d, 6X7K|1|d, 6XZ7|1|B, 6XZA|1|B2, 6XZB|1|B2, 6Y69|1|B, 6YS3|1|a, 6YSR|1|B, 6YSS|1|B, 6YST|1|B, 6ZTJ|1|BB, 6ZTL|1|BB, 6ZTM|1|BB, 6ZTO|1|BB, 6ZTP|1|BB, 6ZU1|1|BB, 7BV8|1|B, 7JT1|1|2, 7JT2|1|2, 7K00|1|b(0) (1) 6OM6|1|3

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SPDBTitleMethodResolutionLength
1
6VWM|1|3
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)ELECTRON MICROSCOPY3.4120
2
6VWN|1|3
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)ELECTRON MICROSCOPY3.4120
3
6VWL|1|3
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)ELECTRON MICROSCOPY3.1120
4
6OGI|1|2
70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)ELECTRON MICROSCOPY3.4120
5
6OFX|1|2
Non-rotated ribosome (Structure I)ELECTRON MICROSCOPY3.3120
6
6OG7|1|2
70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)ELECTRON MICROSCOPY3.3120
7
5GAE|1|B
RNC in complex with a translocating SecYEGELECTRON MICROSCOPY3.33120
8
6ORL|1|3
RF1 pre-accommodated 70S complex at 24 msELECTRON MICROSCOPY3.5120
9
5U4I|1|B
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to RibosomeELECTRON MICROSCOPY3.5118
10
7JT2|1|2
70S ribosome stalled on long mRNA with ArfB bound in the A siteELECTRON MICROSCOPY3.5120
11
7JT1|1|2
70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)ELECTRON MICROSCOPY3.3120
12
5U9G|1|02
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)ELECTRON MICROSCOPY3.2119
13
5U9F|1|02
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)ELECTRON MICROSCOPY3.2119
14
5UYM|1|02
70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)ELECTRON MICROSCOPY3.2120
15
6WD0|1|2
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)ELECTRON MICROSCOPY3120
16
6WDD|1|2
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A)ELECTRON MICROSCOPY3.2120
17
6WDE|1|2
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)ELECTRON MICROSCOPY3120
18
6WDF|1|2
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)ELECTRON MICROSCOPY3.3120
19
6WDG|1|2
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)ELECTRON MICROSCOPY3.3120
20
6WD1|1|2
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B)ELECTRON MICROSCOPY3.3120
21
6BU8|1|02
70S ribosome with S1 domains 1 and 2 (Class 1)ELECTRON MICROSCOPY3.5120
22
5WE6|1|B
70S ribosome-EF-Tu H84A complex with GTP and cognate tRNAELECTRON MICROSCOPY3.4120
23
5WFK|1|B
70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)ELECTRON MICROSCOPY3.4120
24
5WDT|1|B
70S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY3120
25
5WE4|1|B
70S ribosome-EF-Tu wt complex with GppNHpELECTRON MICROSCOPY3.1120
26
5O2R|1|B
Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosomeELECTRON MICROSCOPY3.4120
27
6HRM|1|3
E. coli 70S d2d8 stapled ribosomeELECTRON MICROSCOPY2.96120
28
3JCE|1|B
Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.2118
29
5H5U|1|B
Mechanistic insights into the alternative translation termination by ArfA and RF2ELECTRON MICROSCOPY3.01120
30
6TBV|1|05S1
Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)ELECTRON MICROSCOPY2.7120
31
6TC3|1|05S1
Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)ELECTRON MICROSCOPY2.7120
32
6ENF|1|B
Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PELECTRON MICROSCOPY3.2120
33
6ENU|1|B
Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)ELECTRON MICROSCOPY3.1120
34
6YSR|1|B
Structure of the P+9 stalled ribosome complexELECTRON MICROSCOPY3.1120
35
6YSS|1|B
Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis stateELECTRON MICROSCOPY2.6120
36
6YST|1|B
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis stateELECTRON MICROSCOPY3.2120
37
5WFS|1|B
70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY3120
38
5AFI|1|B
2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.9120
39
5MGP|1|B
Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsELECTRON MICROSCOPY3.1120
40
6Y69|1|B
Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinXELECTRON MICROSCOPY2.86120
41
6H4N|1|B
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeELECTRON MICROSCOPY3120
42
5LZE|1|B
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)ELECTRON MICROSCOPY3.5120
43
5LZD|1|B
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)ELECTRON MICROSCOPY3.4120
44
6ZTL|1|BB
E. coli 70S-RNAP expressome complex in collided state bound to NusGELECTRON MICROSCOPY3.5120
45
6SZS|1|B
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilisELECTRON MICROSCOPY3.06120
46
6S0K|1|B
Ribosome nascent chain in complex with SecAELECTRON MICROSCOPY3.1120
47
6ZTM|1|BB
E. coli 70S-RNAP expressome complex in collided state without NusGELECTRON MICROSCOPY3.3120
48
6ZTJ|1|BB
E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)ELECTRON MICROSCOPY3.4120
49
6ZTO|1|BB
E. coli 70S-RNAP expressome complex in uncoupled state 1ELECTRON MICROSCOPY3120
50
6ZU1|1|BB
E. coli 70S-RNAP expressome complex in uncoupled state 2ELECTRON MICROSCOPY3120
51
6ZTP|1|BB
E. coli 70S-RNAP expressome complex in uncoupled state 6ELECTRON MICROSCOPY3120
52
6XZA|1|B2
E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.66120
53
6XZB|1|B2
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.54120
54
6XZ7|1|B
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.1120
55
7K00|1|b
Structure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.98119
56
6QUL|1|B
Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolidELECTRON MICROSCOPY3120
57
7BV8|1|B
Mature 50S ribosomal subunit from RrmJ knock out E.coli strainELECTRON MICROSCOPY3.14120
58
6U48|1|CB
E. coli 50S with phazolicin (PHZ) bound in exit tunnelELECTRON MICROSCOPY2.87118
59
6PC8|1|J
E. coli 50S ribosome bound to compound 40qELECTRON MICROSCOPY2.9118
60
6PC5|1|J
E. coli 50S ribosome bound to compounds 46 and VS1ELECTRON MICROSCOPY2.7118
61
6PCR|1|J
E. coli 50S ribosome bound to compound 40oELECTRON MICROSCOPY2.5118
62
6PC6|1|J
E. coli 50S ribosome bound to compound 47ELECTRON MICROSCOPY2.5118
63
6PCS|1|J
E. coli 50S ribosome bound to compound 40eELECTRON MICROSCOPY2.8118
64
6PCQ|1|J
E. coli 50S ribosome bound to VM2ELECTRON MICROSCOPY2.6118
65
6PCT|1|J
E. coli 50S ribosome bound to compound 41qELECTRON MICROSCOPY2.8118
66
6PC7|1|J
E. coli 50S ribosome bound to compound 46ELECTRON MICROSCOPY2.5118
67
6PCH|1|J
E. coli 50S ribosome bound to compound 21ELECTRON MICROSCOPY2.9118
68
6WYV|1|J
E. coli 50S ribosome bound to compounds 47 and VS1ELECTRON MICROSCOPY2.75118
69
6OSQ|1|3
RF1 accommodated state bound Release complex 70S at long incubation time pointELECTRON MICROSCOPY3.5120
70
6PJ6|1|J
High resolution cryo-EM structure of E.coli 50SELECTRON MICROSCOPY2.2118
71
5IQR|1|3
Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY3118
72
6C4I|1|B
Conformation of methylated GGQ in the peptidyl transferase center during translation terminationELECTRON MICROSCOPY3.24120
73
5MDV|1|3
Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)ELECTRON MICROSCOPY2.97120
74
6X7F|1|d
Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-siteELECTRON MICROSCOPY3.5120
75
6X7K|1|d
Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-siteELECTRON MICROSCOPY3.1120
76
6X6T|1|d
Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-siteELECTRON MICROSCOPY3.2120
77
5MDZ|1|3
Structure of the 70S ribosome (empty A site)ELECTRON MICROSCOPY3.1120
78
5MDW|1|3
Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)ELECTRON MICROSCOPY3.06120
79
5MDY|1|3
Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)ELECTRON MICROSCOPY3.35120
80
5NWY|1|O
2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexELECTRON MICROSCOPY2.9118
81
6ORE|1|3
Release complex 70SELECTRON MICROSCOPY2.9120
82
4V9P|1|EB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
83
4V9O|1|EB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
84
4YBB|1|CB
High-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1118
85
5JC9|1|CB
Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-RAY DIFFRACTION3.03118
86
5J7L|1|CB
Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION3118
87
5J8A|1|CB
Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-RAY DIFFRACTION3.1118
88
5J91|1|CB
Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.96118
89
5J5B|1|CB
Structure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.8118
90
5IT8|1|CB
High-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION3.12118
91
5J88|1|CB
Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.32118
92
5J88|1|DB
Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.32120
93
5IT8|1|DB
High-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION3.12120
94
5JC9|1|DB
Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-RAY DIFFRACTION3.03120
95
5J7L|1|DB
Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION3120
96
5J8A|1|DB
Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-RAY DIFFRACTION3.1120
97
5J5B|1|DB
Structure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.8120
98
5J91|1|DB
Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.96120
99
4YBB|1|DB
High-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1120
100
6I7V|1|DB
Ribosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.9119
101
4WF1|1|BB
Crystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.09119
102
4U27|1|BB
Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8119
103
4U25|1|BB
Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9119
104
4U24|1|BB
Crystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9119
105
4U26|1|BB
Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8119
106
4U20|1|BB
Crystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9119
107
4U1U|1|BB
Crystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95119
108
4U1V|1|BB
Crystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3119
109
4WWW|1|RB
Crystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.1118
110
4V7S|1|BB
Crystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.25118
111
4V6C|1|BB
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.19118
112
4V7T|1|BB
Crystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.19118
113
4V7V|1|BB
Crystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.29118
114
4V7U|1|BB
Crystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.1118
115
4V9D|1|CB
Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3119
116
4V9C|1|DB
Allosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.3119
117
4WOI|1|BB
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION3119
118
4V85|1|BB
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.2118
119
6LKQ|1|u
The Structural Basis for Inhibition of Ribosomal Translocation by ViomycinX-RAY DIFFRACTION3.1118
120
4V9P|1|AB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
121
4V9O|1|CB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
122
4V9O|1|AB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
123
6I0Y|1|B
TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnelELECTRON MICROSCOPY3.2118
124
4V9P|1|CB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
125
4WOI|1|CB
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION3118
126
4V9C|1|BB
Allosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.3118
127
4V9D|1|DB
Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3118
128
4WF1|1|DB
Crystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.09118
129
4U1U|1|DB
Crystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95118
130
4U20|1|DB
Crystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9118
131
4U1V|1|DB
Crystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3118
132
4U27|1|DB
Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8118
133
4U25|1|DB
Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9118
134
4U24|1|DB
Crystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9118
135
4U26|1|DB
Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8118
136
6I7V|1|CB
Ribosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.9118
137
4V7U|1|DB
Crystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.1117
138
4V7V|1|DB
Crystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.29117
139
4V7T|1|DB
Crystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.19117
140
4V6C|1|DB
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.19117
141
4V7S|1|DB
Crystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.25117
142
4WWW|1|YB
Crystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.1117
143
4V9P|1|GB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
144
4V9O|1|GB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
145
3JBV|1|a
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.32117
146
6YS3|1|a
Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptideELECTRON MICROSCOPY2.58118
147
6QDW|1|a
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptideELECTRON MICROSCOPY2.83118
148
4V4H|1|BA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.46117
149
4V4Q|1|BA
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.46117
150
4V50|1|DA
Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.22117
151
4V50|1|BA
Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.22117
152
4V54|1|BA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.3117
153
4V64|1|BA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.5117
154
4V52|1|BA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.21117
155
4V57|1|BA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.5117
156
4V57|1|DA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.5117
157
4V52|1|DA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.21117
158
4V64|1|DA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.5117
159
4V54|1|DA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.3117
160
4V4Q|1|DA
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.46117
161
4V4H|1|DA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.46117

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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