#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14U26|1|BB (rep)5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
25AFI|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000012.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
34U20|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
44WWW|1|RB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to CEM-101X-ray diffraction3.12014-12-24
54U27|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
64U24|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
74WF1|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to negamycin.X-ray diffraction3.092014-11-05
84YBB|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
94V7V|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to clindamycin.X-ray diffraction3.292014-07-09
104V7T|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to chloramphenicol.X-ray diffraction3.192014-07-09
114U1U|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
124U25|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
134U1V|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
144U1U|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
154V9C|1|DB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.32014-07-09
164V6C|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.192014-07-09
174V6C|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.192014-07-09
184V7S|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to telithromycin.X-ray diffraction3.252014-07-09
194U20|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
204V9D|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
214V54|1|BA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-ray diffraction3.32014-07-09
224V50|1|BA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
234V50|1|DA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
244V54|1|DA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-ray diffraction3.32014-07-09
254V7S|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to telithromycin.X-ray diffraction3.252014-07-09
264V7U|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to erythromycin.X-ray diffraction3.12014-07-09
274V9P|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
284YBB|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
294U27|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
304WF1|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to negamycin.X-ray diffraction3.092014-11-05
314U25|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
324V9D|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
334WOI|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000014,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
344V64|1|BA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-ray diffraction3.52014-07-09
354V64|1|DA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-ray diffraction3.52014-07-09
364V7T|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to chloramphenicol.X-ray diffraction3.192014-07-09
374V9O|1|AB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
384WOI|1|CB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000014,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
394U24|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
404U1V|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
414V57|1|BA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-ray diffraction3.52014-07-09
424V4Q|1|BA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
434V4H|1|BA5S ribosomal RNA5S RIBOSOMAL RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-ray diffraction3.462014-07-09
444V52|1|BA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-ray diffraction3.212014-07-09
454V4Q|1|DA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
464V4H|1|DA5S ribosomal RNA5S RIBOSOMAL RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-ray diffraction3.462014-07-09
474V52|1|DA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-ray diffraction3.212014-07-09
484V57|1|DA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-ray diffraction3.52014-07-09
494V85|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-ray diffraction3.22014-07-09
504V9O|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
514U26|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
524V7V|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to clindamycin.X-ray diffraction3.292014-07-09
534WWW|1|YB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to CEM-101X-ray diffraction3.12014-12-24
544V9P|1|AB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
554V9P|1|EB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
564V9O|1|EB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
574V9O|1|GB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
584V9P|1|GB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
594V7U|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to erythromycin.X-ray diffraction3.12014-07-09
604V9C|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.32014-07-09

Release history

Release2.452.462.472.482.492.502.512.522.532.542.552.562.57
Date2015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-08

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
1
4V9O|1|GB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
2
4V9P|1|GB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
3
4V6C|1|DB
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.19117
4
4V7T|1|DB
Crystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.19117
5
4V7V|1|DB
Crystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.29117
6
4V7S|1|DB
Crystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.25117
7
4WWW|1|YB
Crystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.1117
8
4V7U|1|DB
Crystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.1117
9
4U26|1|DB
Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8118
10
4U24|1|DB
Crystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9118
11
4U25|1|DB
Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9118
12
4U27|1|DB
Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8118
13
4U1V|1|DB
Crystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3118
14
4U20|1|DB
Crystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9118
15
4U1U|1|DB
Crystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95118
16
4WF1|1|DB
Crystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.09118
17
4V9D|1|DB
Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3118
18
4YBB|1|CB
High-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1118
19
4V9O|1|EB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
20
4V9P|1|EB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
21
4WOI|1|CB
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION3118
22
4V9C|1|BB
Allosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.3118
23
4V9P|1|AB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
24
4V9P|1|CB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
25
4V9O|1|CB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
26
4V9O|1|AB
Control of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
27
4WOI|1|BB
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION3119
28
4V9C|1|DB
Allosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.3119
29
4V9D|1|CB
Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3119
30
4YBB|1|DB
High-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1120
31
4U1V|1|BB
Crystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3119
32
4U20|1|BB
Crystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9119
33
4U1U|1|BB
Crystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95119
34
4WF1|1|BB
Crystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.09119
35
4U25|1|BB
Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9119
36
4U27|1|BB
Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8119
37
4U26|1|BB
Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8119
38
4U24|1|BB
Crystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9119
39
4WWW|1|RB
Crystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.1118
40
4V7S|1|BB
Crystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.25118
41
4V7V|1|BB
Crystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.29118
42
4V7T|1|BB
Crystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.19118
43
4V6C|1|BB
Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.19118
44
4V7U|1|BB
Crystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.1118
45
4V85|1|BB
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.2118
46
5AFI|1|B
2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.9120
47
4V4H|1|BA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.46117
48
4V4Q|1|BA
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.46117
49
4V50|1|DA
Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.22117
50
4V50|1|BA
Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.22117
51
4V54|1|BA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.3117
52
4V64|1|BA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.5117
53
4V52|1|BA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.21117
54
4V57|1|BA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.5117
55
4V57|1|DA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.5117
56
4V52|1|DA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.21117
57
4V64|1|DA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.5117
58
4V54|1|DA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.3117
59
4V4Q|1|DA
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.46117
60
4V4H|1|DA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.46117

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