Equivalence class NR_3.5_90506.16 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V88|1|A5+ 4V88|1|A8 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 3308 | 2014-07-09 |
| 2 | 4V88|1|A1+ 4V88|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 3307 | 2014-07-09 |
| 3 | 4U4Q|1|5+ 4U4Q|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3308 | 2014-10-22 |
| 4 | 4U3U|1|1+ 4U3U|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 3307 | 2014-10-22 |
| 5 | 4U4R|1|1+ 4U4R|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 3307 | 2014-10-22 |
| 6 | 4U4R|1|5+ 4U4R|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 3308 | 2014-10-22 |
| 7 | 4U52|1|5+ 4U52|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3308 | 2014-10-22 |
| 8 | 4U4U|1|1+ 4U4U|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3307 | 2014-10-22 |
| 9 | 4U4Z|1|1+ 4U4Z|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3307 | 2014-10-22 |
| 10 | 5LYB|1|5+ 5LYB|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 3308 | 2016-11-23 |
| 11 | 5DGV|1|5+ 5DGV|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 3307 | 2016-12-14 |
| 12 | 4U4Q|1|1+ 4U4Q|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3307 | 2014-10-22 |
| 13 | 5I4L|1|5+ 5I4L|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3308 | 2016-06-22 |
| 14 | 4U3U|1|5+ 4U3U|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 3308 | 2014-10-22 |
| 15 | 4U3M|1|1+ 4U3M|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25s rRNA, 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3307 | 2014-10-22 |
| 16 | 4U55|1|1+ 4U55|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3307 | 2014-10-22 |
| 17 | 4U4N|1|1+ 4U4N|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3307 | 2014-10-22 |
| 18 | 4U4U|1|5+ 4U4U|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3308 | 2014-10-22 |
| 19 | 5FCJ|1|5+ 5FCJ|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-ray diffraction | 3.1 | 3308 | 2016-05-11 |
| 20 | 5DGV|1|1+ 5DGV|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 3306 | 2016-12-14 |
| 21 | 4U52|1|1+ 4U52|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3307 | 2014-10-22 |
| 22 | 5DC3|1|5+ 5DC3|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 3327 | 2016-06-01 |
| 23 | 4U4Y|1|5+ 4U4Y|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3308 | 2014-10-22 |
| 24 | 5FCJ|1|1+ 5FCJ|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-ray diffraction | 3.1 | 3307 | 2016-05-11 |
| 25 | 4U3N|1|5+ 4U3N|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3308 | 2014-10-22 |
| 26 | 5DAT|1|1+ 5DAT|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 3307 | 2016-08-31 |
| 27 | 4U4N|1|5+ 4U4N|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3308 | 2014-10-22 |
| 28 | 5LYB|1|1+ 5LYB|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 3307 | 2016-11-23 |
| 29 | 4U6F|1|1+ 4U6F|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3307 | 2014-10-22 |
| 30 | 4U50|1|5+ 4U50|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3308 | 2014-10-22 |
| 31 | 4U50|1|1+ 4U50|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3307 | 2014-10-22 |
| 32 | 4U55|1|5+ 4U55|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3308 | 2014-10-22 |
| 33 | 4U3M|1|5+ 4U3M|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25s rRNA, 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 3308 | 2014-10-22 |
| 34 | 5DGE|1|5+ 5DGE|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 3308 | 2017-01-25 |
| 35 | 5I4L|1|1+ 5I4L|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3307 | 2016-06-22 |
| 36 | 4U4Z|1|5+ 4U4Z|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3308 | 2014-10-22 |
| 37 | 4U3N|1|1+ 4U3N|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3307 | 2014-10-22 |
| 38 | 4U53|1|5+ 4U53|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 3308 | 2014-10-22 |
| 39 | 4U4Y|1|1+ 4U4Y|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3307 | 2014-10-22 |
| 40 | 5FCI|1|1+ 5FCI|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-ray diffraction | 3.4 | 3307 | 2016-05-11 |
| 41 | 5APO|1|5+ 5APO|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1 | Electron microscopy | 3.41 | 3270 | 2015-12-16 |
| 42 | 5MEI|1|AR+ 5MEI|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 3307 | 2017-06-28 |
| 43 | 5DAT|1|5+ 5DAT|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 3327 | 2016-08-31 |
| 44 | 5DGE|1|1+ 5DGE|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 3307 | 2017-01-25 |
| 45 | 4U51|1|1+ 4U51|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3307 | 2014-10-22 |
| 46 | 5DC3|1|1+ 5DC3|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 3307 | 2016-06-01 |
| 47 | 4U6F|1|5+ 4U6F|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 3308 | 2014-10-22 |
| 48 | 4U51|1|5+ 4U51|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 3308 | 2014-10-22 |
| 49 | 5MEI|1|1+ 5MEI|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 3307 | 2017-06-28 |
| 50 | 5TGA|1|1+ 5TGA|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 3307 | 2016-11-23 |
| 51 | 5DGF|1|5+ 5DGF|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 3327 | 2016-12-14 |
| 52 | 5DGF|1|1+ 5DGF|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 3307 | 2016-12-14 |
| 53 | 4U53|1|1+ 4U53|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 3307 | 2014-10-22 |
| 54 | 5TGA|1|5+ 5TGA|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 3308 | 2016-11-23 |
| 55 | 4U56|1|1+ 4U56|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 3307 | 2014-10-22 |
| 56 | 5FCI|1|5+ 5FCI|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-ray diffraction | 3.4 | 3308 | 2016-05-11 |
| 57 | 4U56|1|5+ 4U56|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 3308 | 2014-10-22 |
| 58 | 5TGM|1|1+ 5TGM|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 3307 | 2017-01-18 |
| 59 | 5TGM|1|5+ 5TGM|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 3308 | 2017-01-18 |
| 60 | 5T62|1|A+ 5T62|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S Ribosomal RNA, 5.8S Ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex | Electron microscopy | 3.1 | 3362 | 2017-02-08 |
| 61 | 5JUP|1|B+ 5JUP|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | Electron microscopy | 3.5 | 3467 | 2016-10-05 |
| 62 | 5M1J|1|14+ 5M1J|1|44 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | Electron microscopy | 3.3 | 3453 | 2017-01-18 |
| 63 | 5H4P|1|1+ 5H4P|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1 | Electron microscopy | 3.07 | 3249 | 2017-01-25 |
| 64 | 3JCT|1|1+ 3JCT|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN58-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | Electron microscopy | 3.08 | 3216 | 2016-06-01 |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 5JUP|1|B+ 5JUP|1|C | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | ELECTRON MICROSCOPY | 3.5 | 3467 | |
| 2 | 5APO|1|5+ 5APO|1|8 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1 | ELECTRON MICROSCOPY | 3.41 | 3270 | |
| 3 | 5T62|1|A+ 5T62|1|C | Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex | ELECTRON MICROSCOPY | 3.1 | 3362 | |
| 4 | 5H4P|1|1+ 5H4P|1|4 | Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1 | ELECTRON MICROSCOPY | 3.07 | 3249 | |
| 5 | 5M1J|1|14+ 5M1J|1|44 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | ELECTRON MICROSCOPY | 3.3 | 3453 | |
| 6 | 5DGF|1|1+ 5DGF|1|4 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 3307 | |
| 7 | 5DAT|1|1+ 5DAT|1|4 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 3307 | |
| 8 | 5DC3|1|1+ 5DC3|1|4 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 3307 | |
| 9 | 5DGE|1|1+ 5DGE|1|4 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 3307 | |
| 10 | 5DGV|1|1+ 5DGV|1|4 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 3306 | |
| 11 | 5LYB|1|1+ 5LYB|1|4 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 3307 | |
| 12 | 4U3N|1|1+ 4U3N|1|4 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3307 | |
| 13 | 4U3U|1|1+ 4U3U|1|4 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 3307 | |
| 14 | 4U4R|1|1+ 4U4R|1|4 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 3307 | |
| 15 | 4V88|1|A1+ 4V88|1|A4 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 3307 | |
| 16 | 4U4Y|1|1+ 4U4Y|1|4 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3307 | |
| 17 | 4U3M|1|1+ 4U3M|1|4 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3307 | |
| 18 | 4U6F|1|1+ 4U6F|1|4 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 19 | 4U52|1|1+ 4U52|1|4 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3307 | |
| 20 | 4U4Q|1|1+ 4U4Q|1|4 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3307 | |
| 21 | 4U4U|1|1+ 4U4U|1|4 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3307 | |
| 22 | 4U51|1|1+ 4U51|1|4 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3307 | |
| 23 | 4U55|1|1+ 4U55|1|4 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3307 | |
| 24 | 5I4L|1|1+ 5I4L|1|4 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 25 | 4U4N|1|1+ 4U4N|1|4 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 26 | 4U4Z|1|1+ 4U4Z|1|4 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 27 | 4U50|1|1+ 4U50|1|4 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3307 | |
| 28 | 4U53|1|1+ 4U53|1|4 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 3307 | |
| 29 | 5MEI|1|1+ 5MEI|1|4 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 3307 | |
| 30 | 5FCJ|1|1+ 5FCJ|1|4 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 31 | 5TGA|1|1+ 5TGA|1|4 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 3307 | |
| 32 | 5TGM|1|1+ 5TGM|1|4 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 3307 | |
| 33 | 4U56|1|1+ 4U56|1|4 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 3307 | |
| 34 | 5FCI|1|1+ 5FCI|1|4 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.4 | 3307 | |
| 35 | 5MEI|1|AR+ 5MEI|1|AT | Crystal structure of Agelastatin A bound to the 80S ribosome | X-RAY DIFFRACTION | 3.5 | 3307 | |
| 36 | 5FCI|1|5+ 5FCI|1|8 | Structure of the vacant uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.4 | 3308 | |
| 37 | 5FCJ|1|5+ 5FCJ|1|8 | Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome | X-RAY DIFFRACTION | 3.1 | 3308 | |
| 38 | 5TGA|1|5+ 5TGA|1|8 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.3 | 3308 | |
| 39 | 5I4L|1|5+ 5I4L|1|8 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3308 | |
| 40 | 5LYB|1|5+ 5LYB|1|8 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-RAY DIFFRACTION | 3.25 | 3308 | |
| 41 | 4U56|1|5+ 4U56|1|8 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.45 | 3308 | |
| 42 | 4U55|1|5+ 4U55|1|8 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3308 | |
| 43 | 4U4Z|1|5+ 4U4Z|1|8 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3308 | |
| 44 | 4U4N|1|5+ 4U4N|1|8 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3308 | |
| 45 | 4V88|1|A5+ 4V88|1|A8 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 3308 | |
| 46 | 4U4R|1|5+ 4U4R|1|8 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 3308 | |
| 47 | 4U3U|1|5+ 4U3U|1|8 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 3308 | |
| 48 | 4U3N|1|5+ 4U3N|1|8 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3308 | |
| 49 | 4U6F|1|5+ 4U6F|1|8 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.1 | 3308 | |
| 50 | 4U52|1|5+ 4U52|1|8 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3308 | |
| 51 | 4U50|1|5+ 4U50|1|8 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3308 | |
| 52 | 4U53|1|5+ 4U53|1|8 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.3 | 3308 | |
| 53 | 4U4Q|1|5+ 4U4Q|1|8 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3308 | |
| 54 | 4U4U|1|5+ 4U4U|1|8 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3308 | |
| 55 | 4U51|1|5+ 4U51|1|8 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3308 | |
| 56 | 4U3M|1|5+ 4U3M|1|8 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 3308 | |
| 57 | 4U4Y|1|5+ 4U4Y|1|8 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3.2 | 3308 | |
| 58 | 5DGE|1|5+ 5DGE|1|8 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-RAY DIFFRACTION | 3.45 | 3308 | |
| 59 | 5DGV|1|5+ 5DGV|1|8 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.1 | 3307 | |
| 60 | 5TGM|1|5+ 5TGM|1|8 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-RAY DIFFRACTION | 3.5 | 3308 | |
| 61 | 5DGF|1|5+ 5DGF|1|8 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-RAY DIFFRACTION | 3.3 | 3327 | |
| 62 | 5DAT|1|5+ 5DAT|1|8 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-RAY DIFFRACTION | 3.15 | 3327 | |
| 63 | 5DC3|1|5+ 5DC3|1|8 | Complex of yeast 80S ribosome with non-modified eIF5A | X-RAY DIFFRACTION | 3.25 | 3327 | |
| 64 | 3JCT|1|1+ 3JCT|1|2 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | ELECTRON MICROSCOPY | 3.08 | 3216 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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