Equivalence class NR_3.5_96870.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8QOA|1|Y (rep) | Transfer RNA | A-site tRNA-pro, mRNA | Escherichia coli BW25113 | Bacteria | RF00005 | Structure of SecM-stalled Escherichia coli 70S ribosome | Electron microscopy | 2 | 2024-03-20 |
| 2 | 8QBT|1|6 | Transfer RNA | Pro-tRNA, mRNA | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli ApdP-stalled ribosomal complex | Electron microscopy | 2.2 | 2024-03-20 |
| 3 | 8QBT|1|5 | Transfer RNA | Pro-tRNA, mRNA | Escherichia coli BW25113 | Bacteria | RF00005 | E. coli ApdP-stalled ribosomal complex | Electron microscopy | 2.2 | 2024-03-20 |
| 4 | 7ST2|1|5 | Transfer RNA | tRNA Pro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII) | Electron microscopy | 2.9 | 2022-02-23 |
| 5 | 7ST6|1|5 | Transfer RNA | tRNA Pro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation, non-rotated 70S ribosome (Structure I) | Electron microscopy | 3 | 2022-02-23 |
| 6 | 7LV0|1|5 | Transfer RNA | tRNAPro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS) | Electron microscopy | 3.2 | 2021-07-28 |
| 7 | 7K54|1|5 | Transfer RNA | tRNAPro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS) | Electron microscopy | 3.2 | 2021-07-28 |
| 8 | 7K53|1|7 | Transfer RNA | tRNAPro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS) | Electron microscopy | 3.2 | 2021-07-28 |
| 9 | 7SSO|1|5 | Transfer RNA | tRNA Pro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A) | Electron microscopy | 3.2 | 2022-02-23 |
| 10 | 7SSN|1|5 | Transfer RNA | tRNA Pro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B) | Electron microscopy | 3.2 | 2022-02-23 |
| 11 | 7ST7|1|5 | Transfer RNA | tRNA Pro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio) | Electron microscopy | 3.2 | 2022-02-23 |
| 12 | 7K55|1|5 | Transfer RNA | tRNAPro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS) | Electron microscopy | 3.3 | 2021-07-28 |
| 13 | 7SSD|1|5 | Transfer RNA | tRNA Pro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Mid translocation intermediate with EF-G bound with GDP (Structure IV) | Electron microscopy | 3.3 | 2022-02-23 |
| 14 | 7K52|1|5 | Transfer RNA | tRNAPro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III) | Electron microscopy | 3.4 | 2021-07-28 |
| 15 | 7K50|1|7 | Transfer RNA | tRNAPro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Pre-translocation non-frameshifting(CCA-A) complex (Structure I) | Electron microscopy | 3.4 | 2021-07-28 |
| 16 | 7K51|1|5 | Transfer RNA | tRNAPro, mRNA | Escherichia coli K-12 | Bacteria | RF00005 | Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II) | Electron microscopy | 3.5 | 2021-07-28 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8QBT|1|5 | E. coli ApdP-stalled ribosomal complex | ELECTRON MICROSCOPY | 2.2 | 77 |
| 2 | 8QOA|1|Y | Structure of SecM-stalled Escherichia coli 70S ribosome | ELECTRON MICROSCOPY | 2 | 77 |
| 3 | 7SSO|1|5 | Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A) | ELECTRON MICROSCOPY | 3.2 | 77 |
| 4 | 7ST6|1|5 | Pre translocation, non-rotated 70S ribosome (Structure I) | ELECTRON MICROSCOPY | 3 | 77 |
| 5 | 7K50|1|7 | Pre-translocation non-frameshifting(CCA-A) complex (Structure I) | ELECTRON MICROSCOPY | 3.4 | 77 |
| 6 | 7K53|1|7 | Pre-translocation +1-frameshifting(CCC-A) complex (Structure I-FS) | ELECTRON MICROSCOPY | 3.2 | 77 |
| 7 | 8QBT|1|6 | E. coli ApdP-stalled ribosomal complex | ELECTRON MICROSCOPY | 2.2 | 77 |
| 8 | 7ST2|1|5 | Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII) | ELECTRON MICROSCOPY | 2.9 | 77 |
| 9 | 7K55|1|5 | Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS) | ELECTRON MICROSCOPY | 3.3 | 77 |
| 10 | 7K52|1|5 | Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III) | ELECTRON MICROSCOPY | 3.4 | 77 |
| 11 | 7K54|1|5 | Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS) | ELECTRON MICROSCOPY | 3.2 | 77 |
| 12 | 7K51|1|5 | Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II) | ELECTRON MICROSCOPY | 3.5 | 77 |
| 13 | 7SSD|1|5 | Mid translocation intermediate with EF-G bound with GDP (Structure IV) | ELECTRON MICROSCOPY | 3.3 | 77 |
| 14 | 7LV0|1|5 | Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS) | ELECTRON MICROSCOPY | 3.2 | 77 |
| 15 | 7SSN|1|5 | Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B) | ELECTRON MICROSCOPY | 3.2 | 77 |
| 16 | 7ST7|1|5 | Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio) | ELECTRON MICROSCOPY | 3.2 | 76 |