Equivalence class NR_4.0_05887.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7YSE|1|E (rep) | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | Crystal structure of E. coli hetertetrameric GlyRS in complex with tRNA | X-ray diffraction | 2.907 | 2023-02-01 |
| 2 | 7F36|1|F | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | TacT complexed with acetyl-glycyl-tRNAGly | X-ray diffraction | 3.098 | 2021-12-22 |
| 3 | 7F36|1|G | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | TacT complexed with acetyl-glycyl-tRNAGly | X-ray diffraction | 3.098 | 2021-12-22 |
| 4 | 7F36|1|E | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | TacT complexed with acetyl-glycyl-tRNAGly | X-ray diffraction | 3.098 | 2021-12-22 |
| 5 | 7F36|1|H | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | TacT complexed with acetyl-glycyl-tRNAGly | X-ray diffraction | 3.098 | 2021-12-22 |
| 6 | 7YSE|1|F | Transfer RNA | RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | Crystal structure of E. coli hetertetrameric GlyRS in complex with tRNA | X-ray diffraction | 2.907 | 2023-02-01 |
| 7 | 7ZQ6|1|M | Transfer RNA | Gly-tRNA | Escherichia coli | Bacteria | RF00005 | 70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain | Electron microscopy | 2.75 | 2022-08-10 |
| 8 | 6OM6|1|5 | Transfer RNA | tRNA(gly), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA | Electron microscopy | 3.1 | 2021-02-10 |
Release history
| Release | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_05887.1 | NR_4.0_04953.1 | 3.268 | (4) 7F36|1|H, 7F36|1|G, 7F36|1|F, 7F36|1|E | (4) 7ZQ6|1|M, 7YSE|1|F, 7YSE|1|E, 6OM6|1|5 | (0) |
| NR_4.0_05887.1 | NR_4.0_26825.1 | 3.268 | (2) 6OM6|1|5, 7ZQ6|1|M | (6) 7F36|1|E, 7YSE|1|F, 7YSE|1|E, 7F36|1|H, 7F36|1|G, 7F36|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7F36|1|F | TacT complexed with acetyl-glycyl-tRNAGly | X-RAY DIFFRACTION | 3.098 | 76 |
| 2 | 7F36|1|G | TacT complexed with acetyl-glycyl-tRNAGly | X-RAY DIFFRACTION | 3.098 | 76 |
| 3 | 7F36|1|E | TacT complexed with acetyl-glycyl-tRNAGly | X-RAY DIFFRACTION | 3.098 | 73 |
| 4 | 7F36|1|H | TacT complexed with acetyl-glycyl-tRNAGly | X-RAY DIFFRACTION | 3.098 | 72 |
| 5 | 7YSE|1|F | Crystal structure of E. coli hetertetrameric GlyRS in complex with tRNA | X-RAY DIFFRACTION | 2.907 | 64 |
| 6 | 7YSE|1|E | Crystal structure of E. coli hetertetrameric GlyRS in complex with tRNA | X-RAY DIFFRACTION | 2.907 | 76 |
| 7 | 7ZQ6|1|M | 70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain | ELECTRON MICROSCOPY | 2.75 | 76 |
| 8 | 6OM6|1|5 | Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA | ELECTRON MICROSCOPY | 3.1 | 74 |