#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
13UCZ|1|R (rep)Cyclic di-GMP-I riboswitchRNA (92-MER), RNA (5'-R(*GP*G)-3')RF01051The c-di-GMP-I riboswitch bound to GpGX-ray diffraction2.82012-01-04
23UD3|1|RCyclic di-GMP-I riboswitchRNA (92-MER), RNA (5'-R(P*GP*A)-3')RF01051The C92U mutant c-di-GMP-I riboswitch bound to pGpAX-ray diffraction3.12012-01-04
33UCU|1|RCyclic di-GMP-I riboswitchRNA (92-MER), diguanosine monophosphateRF01051The c-di-GMP-I riboswitch bound to pGpGX-ray diffraction2.82012-01-04
43MXH|1|RCyclic di-GMP-I riboswitchc-di-GMP riboswitchRF01051Native structure of a c-di-GMP riboswitch from V. choleraeX-ray diffraction2.32010-08-25
53MUR|1|RCyclic di-GMP-I riboswitchC92U mutant c-di-GMP riboswitchRF01051Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMPX-ray diffraction32010-08-25
63MUV|1|RCyclic di-GMP-I riboswitchG20A/C92U mutant c-di-GMP riboswitchRF01051Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-AMPX-ray diffraction3.22010-08-25
73UD4|1|RCyclic di-GMP-I riboswitchRNA (92-MER), RNA (5'-R(*GP*A)-3')RF01051The C92U mutant c-di-GMP-I riboswitch bound to GpAX-ray diffraction2.72012-01-04
83MUM|1|RCyclic di-GMP-I riboswitchG20A mutant c-di-GMP RiboswitchRF01051Crystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMPX-ray diffraction2.92010-08-25
93IRW|1|RCyclic di-GMP-I riboswitchc-di-GMP RiboswitchVibrio choleraeBacteriaRF01051Structure of a c-di-GMP riboswitch from V. choleraeX-ray diffraction2.72009-11-10
103IWN|1|ACyclic di-GMP-I riboswitchC-di-GMP riboswitchRF01051Co-crystal structure of a bacterial c-di-GMP riboswitchX-ray diffraction3.22009-11-10
113MUT|1|RCyclic di-GMP-I riboswitchG20A/C92U mutant c-di-GMP riboswitchRF01051Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMPX-ray diffraction32010-08-25
123IWN|1|BCyclic di-GMP-I riboswitchC-di-GMP riboswitchRF01051Co-crystal structure of a bacterial c-di-GMP riboswitchX-ray diffraction3.22009-11-10

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.18
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13MUV|1|RCrystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-AMPX-RAY DIFFRACTION3.290
23IRW|1|RStructure of a c-di-GMP riboswitch from V. choleraeX-RAY DIFFRACTION2.790
33UD4|1|RThe C92U mutant c-di-GMP-I riboswitch bound to GpAX-RAY DIFFRACTION2.791
43UCU|1|RThe c-di-GMP-I riboswitch bound to pGpGX-RAY DIFFRACTION2.891
53UD3|1|RThe C92U mutant c-di-GMP-I riboswitch bound to pGpAX-RAY DIFFRACTION3.191
63UCZ|1|RThe c-di-GMP-I riboswitch bound to GpGX-RAY DIFFRACTION2.891
73MUR|1|RCrystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION391
83MUT|1|RCrystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION391
93MUM|1|RCrystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION2.991
103MXH|1|RNative structure of a c-di-GMP riboswitch from V. choleraeX-RAY DIFFRACTION2.391
113IWN|1|BCo-crystal structure of a bacterial c-di-GMP riboswitchX-RAY DIFFRACTION3.293
123IWN|1|ACo-crystal structure of a bacterial c-di-GMP riboswitchX-RAY DIFFRACTION3.293