Equivalence class NR_4.0_40063.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8SA3|1|A (rep) | Cobalamin riboswitch | adenosylcobalamin riboswitch form 2 | Caldanaerobacter subterraneus subsp. tengcongensis | Bacteria | RF00174 | Adenosylcobalamin-bound riboswitch dimer, form 2 | Electron microscopy | 3 | 2023-07-26 |
| 2 | 8SA3|1|B | Cobalamin riboswitch | adenosylcobalamin riboswitch form 2 | Caldanaerobacter subterraneus subsp. tengcongensis | Bacteria | RF00174 | Adenosylcobalamin-bound riboswitch dimer, form 2 | Electron microscopy | 3 | 2023-07-26 |
| 3 | 8SA2|1|B | Cobalamin riboswitch | adenosylcobalamin riboswitch form 1 | Caldanaerobacter subterraneus subsp. tengcongensis | Bacteria | RF00174 | Adenosylcobalamin-bound riboswitch dimer, form 1 | Electron microscopy | 3.1 | 2023-07-26 |
| 4 | 8SA2|1|A | Cobalamin riboswitch | adenosylcobalamin riboswitch form 1 | Caldanaerobacter subterraneus subsp. tengcongensis | Bacteria | RF00174 | Adenosylcobalamin-bound riboswitch dimer, form 1 | Electron microscopy | 3.1 | 2023-07-26 |
| 5 | 8SA4|1|A+ 8SA4|1|B | Cobalamin riboswitch + Cobalamin riboswitch | adenosylcobalamin riboswitch form 3 | Caldanaerobacter subterraneus subsp. tengcongensis | Bacteria | RF00174 + RF00174 | Adenosylcobalamin-bound riboswitch dimer, form 3 | Electron microscopy | 3.1 | 2023-07-26 |
| 6 | 8SA5|1|A | Cobalamin riboswitch | adenosylcobalamin riboswitch form 4 | Caldanaerobacter subterraneus subsp. tengcongensis | Bacteria | RF00174 | Adenosylcobalamin-bound riboswitch dimer, form 4 | Electron microscopy | 3.5 | 2023-07-26 |
| 7 | 8SA5|1|B | Cobalamin riboswitch | adenosylcobalamin riboswitch form 4 | Caldanaerobacter subterraneus subsp. tengcongensis | Bacteria | RF00174 | Adenosylcobalamin-bound riboswitch dimer, form 4 | Electron microscopy | 3.5 | 2023-07-26 |
Release history
| Release | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8SA4|1|A+8SA4|1|B | Adenosylcobalamin-bound riboswitch dimer, form 3 | ELECTRON MICROSCOPY | 3.1 | 189 |
| 2 | 8SA3|1|B | Adenosylcobalamin-bound riboswitch dimer, form 2 | ELECTRON MICROSCOPY | 3 | 210 |
| 3 | 8SA5|1|A | Adenosylcobalamin-bound riboswitch dimer, form 4 | ELECTRON MICROSCOPY | 3.5 | 210 |
| 4 | 8SA2|1|B | Adenosylcobalamin-bound riboswitch dimer, form 1 | ELECTRON MICROSCOPY | 3.1 | 210 |
| 5 | 8SA2|1|A | Adenosylcobalamin-bound riboswitch dimer, form 1 | ELECTRON MICROSCOPY | 3.1 | 210 |
| 6 | 8SA3|1|A | Adenosylcobalamin-bound riboswitch dimer, form 2 | ELECTRON MICROSCOPY | 3 | 210 |
| 7 | 8SA5|1|B | Adenosylcobalamin-bound riboswitch dimer, form 4 | ELECTRON MICROSCOPY | 3.5 | 135 |
Coloring options: