Equivalence class NR_4.0_96269.13 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6ZP4|1|1 (rep) | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | Electron microscopy | 2.9 | 2020-07-29 |
| 2 | 6QZP|1|S6 | Transfer RNA | E site tRNA (75-MER) | Homo sapiens | Eukarya | RF00005 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2019-04-24 |
| 3 | 7QVP|1|B5 | Transfer RNA | tRNA P/E, mRNA | Homo sapiens | Eukarya | RF00005 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | Electron microscopy | 3 | 2022-10-12 |
| 4 | 8BTR|1|u | Transfer RNA | tRNA, mRNA | Giardia lamblia ATCC 50803 | Eukarya | RF00005 | Giardia Ribosome in PRE-T Hybrid State (D2) | Electron microscopy | 3.25 | 2023-03-22 |
| 5 | 8BTR|1|v | Transfer RNA | tRNA, mRNA | Giardia lamblia ATCC 50803 | Eukarya | RF00005 | Giardia Ribosome in PRE-T Hybrid State (D2) | Electron microscopy | 3.25 | 2023-03-22 |
| 6 | 8BSI|1|Lu | Transfer RNA | E-site tRNA | Giardia intestinalis | Eukarya | RF00005 | Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1) | Electron microscopy | 3.4 | 2023-03-15 |
| 7 | 7A09|1|f | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | Structure of a human ABCE1-bound 43S pre-initiation complex - State III | Electron microscopy | 3.5 | 2020-10-14 |
| 8 | 5T2C|1|An | Transfer RNA | tRNA | Homo sapiens | Eukarya | RF00005 | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | Electron microscopy | 3.6 | 2017-01-25 |
| 9 | 6Y57|1|B4 | Transfer RNA | P/E tRNA, mRNA | Homo sapiens | Eukarya | RF00005 | Structure of human ribosome in hybrid-PRE state | Electron microscopy | 3.5 | 2020-04-15 |
| 10 | 4UG0|1|S6 | Transfer RNA | HUMAN INITIATOR MET-TRNA-I | Homo sapiens | Eukarya | RF00005 | STRUCTURE OF THE HUMAN 80S RIBOSOME | Electron microscopy | 3.6 | 2015-06-10 |
| 11 | 8BR8|1|Lu | Transfer RNA | E-site tRNA | Giardia lamblia ATCC 50803 | Eukarya | RF00005 | Giardia ribosome in POST-T state (A1) | Electron microscopy | 3.35 | 2023-03-15 |
Release history
| Release | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 8BTR|1|v | Giardia Ribosome in PRE-T Hybrid State (D2) | ELECTRON MICROSCOPY | 3.25 | 75 |
| 2 | 6Y57|1|B4 | Structure of human ribosome in hybrid-PRE state | ELECTRON MICROSCOPY | 3.5 | 75 |
| 3 | 7QVP|1|B5 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | ELECTRON MICROSCOPY | 3 | 75 |
| 4 | 8BTR|1|u | Giardia Ribosome in PRE-T Hybrid State (D2) | ELECTRON MICROSCOPY | 3.25 | 75 |
| 5 | 8BSI|1|Lu | Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1) | ELECTRON MICROSCOPY | 3.4 | 75 |
| 6 | 8BR8|1|Lu | Giardia ribosome in POST-T state (A1) | ELECTRON MICROSCOPY | 3.35 | 57 |
| 7 | 4UG0|1|S6 | STRUCTURE OF THE HUMAN 80S RIBOSOME | ELECTRON MICROSCOPY | 3.6 | 75 |
| 8 | 5T2C|1|An | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | ELECTRON MICROSCOPY | 3.6 | 75 |
| 9 | 6QZP|1|S6 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 75 |
| 10 | 7A09|1|f | Structure of a human ABCE1-bound 43S pre-initiation complex - State III | ELECTRON MICROSCOPY | 3.5 | 75 |
| 11 | 6ZP4|1|1 | SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2 | ELECTRON MICROSCOPY | 2.9 | 75 |