Equivalence class NR_all_28129.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8AZW|1|A+ 8AZW|1|B (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Nicotiana tabacum | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the plant 60S subunit | Electron microscopy | 2.14 | 2023-06-07 |
| 2 | 8B2L|1|A3+ 8B2L|1|B3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Nicotiana tabacum | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the plant 80S ribosome | Electron microscopy | 2.2 | 2023-08-23 |
| 3 | 7QIW|1|2+ 7QIW|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Solanum lycopersicum | Eukarya | RF02543 + RF00002 | Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit. | Electron microscopy | 2.35 | 2022-07-13 |
| 4 | 7QIZ|1|2+ 7QIZ|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Solanum lycopersicum | Eukarya | RF02543 + RF00002 | Specific features and methylation sites of a plant 80S ribosome | Electron microscopy | 2.38 | 2022-08-03 |
Release history
| Release | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_28129.3 | NR_all_28129.2 | 3.297 | (3) 8AZW|1|A+8AZW|1|B, 7QIZ|1|2+7QIZ|1|8, 7QIW|1|2+7QIW|1|8 | (1) 8B2L|1|A3+8B2L|1|B3 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7QIW|1|2+7QIW|1|8 | Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit. | ELECTRON MICROSCOPY | 2.35 | 2975 |
| 2 | 7QIZ|1|2+7QIZ|1|8 | Specific features and methylation sites of a plant 80S ribosome | ELECTRON MICROSCOPY | 2.38 | 2975 |
| 3 | 8AZW|1|A+8AZW|1|B | Cryo-EM structure of the plant 60S subunit | ELECTRON MICROSCOPY | 2.14 | 3066 |
| 4 | 8B2L|1|A3+8B2L|1|B3 | Cryo-EM structure of the plant 80S ribosome | ELECTRON MICROSCOPY | 2.2 | 3066 |