NR_all_34359.10

Members (29)
History
Heat map

#	IFE	Molecule	Organism	Title	Method	Res. Å	Date
1	2NVQ\|1\|R (rep)	5'-R(APUPCPGPAPGPAPGPGPA)-3'	synthetic construct	RNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTP	X-ray diffraction	2.9	2006-12-12
2	6UPZ\|1\|R	RNA	synthetic construct	RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3	X-ray diffraction	3.1	2020-06-10
3	2NVX\|1\|R	5'-R(APUPCPGPAPGPAPGPGPA)-3'		RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTP	X-ray diffraction	3.6	2006-12-19
4	2E2I\|1\|R	5'-R(APUPCPGPAPGPAPGPGPA)-3'		RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP	X-ray diffraction	3.41	2006-12-19
5	6UQ0\|1\|R	RNA	synthetic construct	RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4	X-ray diffraction	3.56	2020-06-10
6	7KEE\|1\|R	RNA	synthetic construct	RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site	X-ray diffraction	3.45	2021-06-23
7	2E2H\|1\|R	5'-R(APUPCPGPAPGPAPGPGPA)-3'		RNA polymerase II elongation complex at 5 mM Mg2+ with GTP	X-ray diffraction	3.95	2006-12-12
8	7KED\|1\|R	RNA	synthetic construct	RNA polymerase II elongation complex with unnatural base dTPT3	X-ray diffraction	3.6	2021-06-23
9	2NVZ\|1\|R	5'-R(APUPCPGPAPGPAPGPGPA)-3'	synthetic construct	RNA Polymerase II elongation complex with UTP, updated 11/2006	X-ray diffraction	4.3	2006-12-19
10	7KEF\|1\|R	RNA	synthetic construct	RNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing state	X-ray diffraction	3.89	2021-06-23
11	1SFO\|1\|R	RNA STRAND		RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX	X-ray diffraction	3.61	2004-03-02
12	1R9T\|1\|R	RNA strand		RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE	X-ray diffraction	3.5	2004-11-16
13	2YU9\|1\|R	5'-R(APUPCPGPAPGPAPGPGPA)-3'	synthetic construct	RNA polymerase II elongation complex in 150 mm MG+2 with UTP	X-ray diffraction	3.4	2007-04-24
14	1R9S\|1\|R	RNA strand		RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE	X-ray diffraction	4.25	2004-11-16
15	8B3D\|1\|P	RNA	Homo sapiens	Structure of the Pol II-TCR-ELOF1 complex.	Electron microscopy	2.6	2023-09-27
16	7OOB\|1\|P	RNA	Homo sapiens	Pol II-CSB-CSA-DDB1-UVSSA-ADPBeF3 (Structure2)	Electron microscopy	2.7	2021-10-13
17	7OO3\|1\|P	RNA	Homo sapiens	Pol II-CSB-CSA-DDB1-UVSSA (Structure1)	Electron microscopy	2.8	2021-10-06
18	8B3F\|1\|P	RNA	Homo sapiens	Pol II-CSB-CSA-DDB1-ELOF1	Electron microscopy	3.1	2023-09-27
19	8TVY\|1\|R	RNA	synthetic construct	Cryo-EM structure of CPD lesion containing RNA Polymerase II elongation complex with Rad26 and Elf1 (closed state)	Electron microscopy	3.1	2024-01-24
20	8TUG\|1\|R	RNA	synthetic construct	Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (engaged state)	Electron microscopy	3.5	2024-01-24
21	8TVW\|1\|R	RNA	synthetic construct	Cryo-EM structure of CPD-stalled Pol II (conformation 1)	Electron microscopy	3.6	2024-01-24
22	8TVX\|1\|R	RNA	synthetic construct	Cryo-EM structure of CPD-stalled Pol II (Conformation 2)	Electron microscopy	3.7	2024-01-24
23	8TVP\|1\|R	RNA	synthetic construct	Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (open state)	Electron microscopy	3.7	2024-01-24
24	6H67\|1\|R	RNA	Saccharomyces cerevisiae	Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)	Electron microscopy	3.6	2018-08-29
25	6H68\|1\|R	RNA	Saccharomyces cerevisiae	Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-ordered A49	Electron microscopy	4.6	2018-08-29
26	8TVQ\|1\|R	RNA	synthetic construct	Cryo-EM structure of CPD stalled 10-subunit Pol II in complex with Rad26	Electron microscopy	4.6	2024-01-24
27	7Z2Z\|1\|R	RNA	Saccharomyces cerevisiae S288C	Structure of yeast RNA Polymerase III-DNA-Ty1 integrase complex (Pol III-DNA-IN1) at 3.1 A	Electron microscopy	3.07	2023-04-05
28	5VVR\|1\|R	RNA	Saccharomyces cerevisiae	Ternary complex of RNA Pol II, transcription scaffold and Rad26	Electron microscopy	5.8	2017-11-22
29	5VVS\|1\|R	RNA	Saccharomyces cerevisiae	RNA pol II elongation complex	Electron microscopy	6.4	2017-11-22

Release history

Release	3.319	3.320	3.321	3.322	3.323	3.324	3.325	3.326	3.327	3.328	3.329	3.330	3.331
Date	2024-01-24	2024-01-31	2024-02-07	2024-02-14	2024-02-21	2024-02-28	2024-03-06	2024-03-13	2024-03-20	2024-03-27	2024-04-03	2024-04-10	2024-04-17

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	6UPZ\|1\|R	RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 3	X-RAY DIFFRACTION	3.1	10
2	1R9T\|1\|R	RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MISMATCHED NUCLEOTIDE	X-RAY DIFFRACTION	3.5	10
3	1SFO\|1\|R	RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX	X-RAY DIFFRACTION	3.61	10
4	1R9S\|1\|R	RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX, MATCHED NUCLEOTIDE	X-RAY DIFFRACTION	4.25	10
5	6H68\|1\|R	Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) with fully-ordered A49	ELECTRON MICROSCOPY	4.6	10
6	7KEF\|1\|R	RNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing state	X-RAY DIFFRACTION	3.89	10
7	2E2H\|1\|R	RNA polymerase II elongation complex at 5 mM Mg2+ with GTP	X-RAY DIFFRACTION	3.95	10
8	2NVZ\|1\|R	RNA Polymerase II elongation complex with UTP, updated 11/2006	X-RAY DIFFRACTION	4.3	10
9	6UQ0\|1\|R	RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 4	X-RAY DIFFRACTION	3.56	9
10	7KED\|1\|R	RNA polymerase II elongation complex with unnatural base dTPT3	X-RAY DIFFRACTION	3.6	10
11	2E2I\|1\|R	RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dGTP	X-RAY DIFFRACTION	3.41	10
12	2NVX\|1\|R	RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTP	X-RAY DIFFRACTION	3.6	10
13	2YU9\|1\|R	RNA polymerase II elongation complex in 150 mm MG+2 with UTP	X-RAY DIFFRACTION	3.4	10
14	2NVQ\|1\|R	RNA Polymerase II Elongation Complex in 150 mM Mg+2 with 2'dUTP	X-RAY DIFFRACTION	2.9	10
15	7OO3\|1\|P	Pol II-CSB-CSA-DDB1-UVSSA (Structure1)	ELECTRON MICROSCOPY	2.8	10
16	7OOB\|1\|P	Pol II-CSB-CSA-DDB1-UVSSA-ADPBeF3 (Structure2)	ELECTRON MICROSCOPY	2.7	10
17	8B3F\|1\|P	Pol II-CSB-CSA-DDB1-ELOF1	ELECTRON MICROSCOPY	3.1	10
18	8B3D\|1\|P	Structure of the Pol II-TCR-ELOF1 complex.	ELECTRON MICROSCOPY	2.6	10
19	8TVQ\|1\|R	Cryo-EM structure of CPD stalled 10-subunit Pol II in complex with Rad26	ELECTRON MICROSCOPY	4.6	9
20	8TUG\|1\|R	Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (engaged state)	ELECTRON MICROSCOPY	3.5	10
21	8TVY\|1\|R	Cryo-EM structure of CPD lesion containing RNA Polymerase II elongation complex with Rad26 and Elf1 (closed state)	ELECTRON MICROSCOPY	3.1	10
22	8TVW\|1\|R	Cryo-EM structure of CPD-stalled Pol II (conformation 1)	ELECTRON MICROSCOPY	3.6	10
23	8TVX\|1\|R	Cryo-EM structure of CPD-stalled Pol II (Conformation 2)	ELECTRON MICROSCOPY	3.7	10
24	5VVR\|1\|R	Ternary complex of RNA Pol II, transcription scaffold and Rad26	ELECTRON MICROSCOPY	5.8	10
25	8TVP\|1\|R	Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (open state)	ELECTRON MICROSCOPY	3.7	10
26	7KEE\|1\|R	RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site	X-RAY DIFFRACTION	3.45	10
27	6H67\|1\|R	Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD)	ELECTRON MICROSCOPY	3.6	9
28	5VVS\|1\|R	RNA pol II elongation complex	ELECTRON MICROSCOPY	6.4	10
29	7Z2Z\|1\|R	Structure of yeast RNA Polymerase III-DNA-Ty1 integrase complex (Pol III-DNA-IN1) at 3.1 A	ELECTRON MICROSCOPY	3.07	3

Equivalence class NR_all_34359.10 Obsolete

Release history

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