BGSU RNA Site //

Equivalence class NR_all_60347.1 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
17RE3|1|T+ 7RE3|1|P (rep)Template RNA, Product RNAsynthetic constructSyntheticSARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC dimerElectron microscopy3.332021-11-24
27RE3|1|U+ 7RE3|1|QTemplate RNA, Product RNAsynthetic constructSyntheticSARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC dimerElectron microscopy3.332021-11-24
37KRN|1|T+ 7KRN|1|PRNA (43-MER), RNA (37-MER)Severe acute respiratory syndrome coronavirus 2VirusesStructure of SARS-CoV-2 backtracked complex bound to nsp13 helicase - nsp13(1)-BTCElectron microscopy3.42021-04-21
47RDX|1|T+ 7RDX|1|PTemplate RNA, Product RNAsynthetic constructSyntheticSARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - open classElectron microscopy3.12021-11-24
57KRO|1|T+ 7KRO|1|PRNA (43-MER), RNA (37-MER)Severe acute respiratory syndrome coronavirus 2VirusesStructure of SARS-CoV-2 backtracked complex complex bound to nsp13 helicase - nsp13(2)-BTCElectron microscopy3.62021-04-21
67RDZ|1|T+ 7RDZ|1|PTemplate RNA, Product RNAsynthetic constructSyntheticSARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - apo classElectron microscopy3.62021-11-24
76XEZ|1|T+ 6XEZ|1|PTemplate RNA, Product RNASevere acute respiratory syndrome-related coronavirusVirusesStructure of SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTCElectron microscopy3.52020-07-29

Release history

Release3.206
Date2021-11-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_60347.1NR_all_18100.13.206(3) 7KRO|1|T+7KRO|1|P, 7KRN|1|T+7KRN|1|P, 6XEZ|1|T+6XEZ|1|P(4) 7RE3|1|U+7RE3|1|Q, 7RE3|1|T+7RE3|1|P, 7RDZ|1|T+7RDZ|1|P, 7RDX|1|T+7RDX|1|P(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_60347.1NR_all_51758.13.207(7) 7RDX|1|T+7RDX|1|P, 7KRO|1|T+7KRO|1|P, 7RE3|1|U+7RE3|1|Q, 7KRN|1|T+7KRN|1|P, 7RE3|1|T+7RE3|1|P, 6XEZ|1|T+6XEZ|1|P, 7RDZ|1|T+7RDZ|1|P(0) (4) 7RE0|1|T+7RE0|1|P, 7RDY|1|T+7RDY|1|P, 7RE2|1|T+7RE2|1|P, 7RE1|1|T+7RE1|1|P

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17RDX|1|T+7RDX|1|PSARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - open classELECTRON MICROSCOPY3.146
27RE3|1|U+7RE3|1|QSARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC dimerELECTRON MICROSCOPY3.3337
37RE3|1|T+7RE3|1|PSARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC dimerELECTRON MICROSCOPY3.3337
47RDZ|1|T+7RDZ|1|PSARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC - apo classELECTRON MICROSCOPY3.637
56XEZ|1|T+6XEZ|1|PStructure of SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTCELECTRON MICROSCOPY3.536
67KRO|1|T+7KRO|1|PStructure of SARS-CoV-2 backtracked complex complex bound to nsp13 helicase - nsp13(2)-BTCELECTRON MICROSCOPY3.643
77KRN|1|T+7KRN|1|PStructure of SARS-CoV-2 backtracked complex bound to nsp13 helicase - nsp13(1)-BTCELECTRON MICROSCOPY3.443