Equivalence class NR_all_82548.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V4R|1|AV (rep) | Transfer RNA | P-site tRNA (Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of the whole ribosomal complex. | X-ray diffraction | 5.9 | 2014-07-09 |
| 2 | 4V4S|1|AV | Transfer RNA | P-site tRNA (Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of the whole ribosomal complex. | X-ray diffraction | 6.76 | 2014-07-09 |
| 3 | 4V4T|1|AV | Transfer RNA | P-site tRNA (Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of the whole ribosomal complex with a stop codon in the A-site. | X-ray diffraction | 6.46 | 2014-07-09 |
| 4 | 4V4R|1|AW | Transfer RNA | E-site tRNA (Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of the whole ribosomal complex. | X-ray diffraction | 5.9 | 2014-07-09 |
| 5 | 4V4S|1|AW | Transfer RNA | E-site tRNA (Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of the whole ribosomal complex. | X-ray diffraction | 6.76 | 2014-07-09 |
| 6 | 4V4T|1|AW | Transfer RNA | E-site tRNA (Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of the whole ribosomal complex with a stop codon in the A-site. | X-ray diffraction | 6.46 | 2014-07-09 |
| 7 | 4V49|1|AW | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome. | X-ray diffraction | 8.7 | 2014-07-09 |
| 8 | 4V49|1|AV | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome. | X-ray diffraction | 8.7 | 2014-07-09 |
| 9 | 4V66|1|AE | Transfer RNA | A/T, P and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Structure of the E. coli ribosome and the tRNAs in Post-accommodation state | Electron microscopy | 9 | 2014-07-09 |
| 10 | 4V65|1|AE | Transfer RNA | A/T, P and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Structure of the E. coli ribosome in the Pre-accommodation state | Electron microscopy | 9 | 2014-07-09 |
| 11 | 3EP2|1|Y | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Model of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EM | Electron microscopy | 9 | 2008-12-16 |
| 12 | 3EQ3|1|Y | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM | Electron microscopy | 9 | 2008-12-16 |
| 13 | 4V65|1|AA | Transfer RNA | A/T, P and E-site tRNAs, mRNA model | Escherichia coli | Bacteria | RF00005 | Structure of the E. coli ribosome in the Pre-accommodation state | Electron microscopy | 9 | 2014-07-09 |
| 14 | 4V66|1|AA | Transfer RNA | A/T, P and E-site tRNAs, mRNA model | Escherichia coli | Bacteria | RF00005 | Structure of the E. coli ribosome and the tRNAs in Post-accommodation state | Electron microscopy | 9 | 2014-07-09 |
| 15 | 4V66|1|AP | Transfer RNA | A/T, P and E-site tRNAs, mRNA model | Escherichia coli | Bacteria | RF00005 | Structure of the E. coli ribosome and the tRNAs in Post-accommodation state | Electron microscopy | 9 | 2014-07-09 |
| 16 | 4V65|1|AP | Transfer RNA | A/T, P and E-site tRNAs, mRNA model | Escherichia coli | Bacteria | RF00005 | Structure of the E. coli ribosome in the Pre-accommodation state | Electron microscopy | 9 | 2014-07-09 |
| 17 | 4V48|1|A6 | Transfer RNA | tRNA-PHE | Escherichia coli | Bacteria | RF00005 | Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome | Electron microscopy | 11.5 | 2014-07-09 |
| 18 | 3DEG|1|A | Transfer RNA | A/L-tRNA | Escherichia coli | Bacteria | RF00005 | Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP | Electron microscopy | 10.9 | 2008-08-19 |
| 19 | 1MJ1|1|C | Transfer RNA | Phe-tRNA | Escherichia coli | Bacteria | RF00005 | FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME | Electron microscopy | 13 | 2002-11-01 |
| 20 | 1ZO1|1|F | Transfer RNA | P/I-site tRNA | Escherichia coli | Bacteria | RF00005 | IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex | Electron microscopy | 13.8 | 2005-06-14 |
| 21 | 1ZO3|1|A | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | The P-site and P/E-site tRNA structures fitted to P/I site codon. | Electron microscopy | 13.8 | 2005-06-14 |
| 22 | 1ZO3|1|B | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | The P-site and P/E-site tRNA structures fitted to P/I site codon. | Electron microscopy | 13.8 | 2005-06-14 |
| 23 | 1ML5|1|B | Transfer RNA | A- AND P-SITE MESSENGER RNA CODONS, T-RNA(PHE) | Escherichia coli | Bacteria | RF00005 | Structure of the E. coli ribosomal termination complex with release factor 2 | Electron microscopy | 14 | 2003-01-14 |
| 24 | 1MJ1|1|D | Transfer RNA | Phe-tRNA | Escherichia coli | Bacteria | RF00005 | FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME | Electron microscopy | 13 | 2002-11-01 |
| 25 | 4V4W|1|AW | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143 | Electron microscopy | 15 | 2014-07-09 |
| 26 | 4V4W|1|AV | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143 | Electron microscopy | 15 | 2014-07-09 |
| 27 | 4V4W|1|AU | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143 | Electron microscopy | 15 | 2014-07-09 |
| 28 | 4V4V|1|AV | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056 | Electron microscopy | 15 | 2014-07-09 |
| 29 | 4V4V|1|AW | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056 | Electron microscopy | 15 | 2014-07-09 |
| 30 | 4V4V|1|AU | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056 | Electron microscopy | 15 | 2014-07-09 |
Release history
| Release | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 |
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| Date | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_82548.1 | NR_all_06843.2 | 3.151 | (30) 1MJ1|1|C, 1MJ1|1|D, 1ML5|1|B, 1ZO1|1|F, 1ZO3|1|A, 1ZO3|1|B, 3DEG|1|A, 3EP2|1|Y, 3EQ3|1|Y, 4V48|1|A6, 4V49|1|AV, 4V49|1|AW, 4V4R|1|AV, 4V4R|1|AW, 4V4S|1|AV, 4V4S|1|AW, 4V4T|1|AV, 4V4T|1|AW, 4V4V|1|AU, 4V4V|1|AV, 4V4V|1|AW, 4V4W|1|AU, 4V4W|1|AV, 4V4W|1|AW, 4V65|1|AA, 4V65|1|AE, 4V65|1|AP, 4V66|1|AA, 4V66|1|AE, 4V66|1|AP | (0) | (17) 1EVV|1|A, 1JGO|1|B, 1JGO|1|C, 1JGP|1|B, 1JGP|1|C, 1JGQ|1|B, 1JGQ|1|C, 1SZ1|1|E, 1SZ1|1|F, 1TTT|1|D, 1TTT|1|E, 1TTT|1|F, 3WC2|1|P, 3WC2|1|Q, 4V42|1|AB, 4V42|1|AC, 4V69|1|AY |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4V65|1|AA | Structure of the E. coli ribosome in the Pre-accommodation state | ELECTRON MICROSCOPY | 9 | 75 |
| 2 | 1MJ1|1|C | FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME | ELECTRON MICROSCOPY | 13 | 62 |
| 3 | 1ML5|1|B | Structure of the E. coli ribosomal termination complex with release factor 2 | ELECTRON MICROSCOPY | 14 | 62 |
| 4 | 4V49|1|AV | Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome. | X-RAY DIFFRACTION | 8.7 | 76 |
| 5 | 4V4S|1|AV | Crystal structure of the whole ribosomal complex. | X-RAY DIFFRACTION | 6.76 | 76 |
| 6 | 4V4R|1|AV | Crystal structure of the whole ribosomal complex. | X-RAY DIFFRACTION | 5.9 | 76 |
| 7 | 4V4T|1|AV | Crystal structure of the whole ribosomal complex with a stop codon in the A-site. | X-RAY DIFFRACTION | 6.46 | 76 |
| 8 | 4V66|1|AP | Structure of the E. coli ribosome and the tRNAs in Post-accommodation state | ELECTRON MICROSCOPY | 9 | 75 |
| 9 | 4V65|1|AP | Structure of the E. coli ribosome in the Pre-accommodation state | ELECTRON MICROSCOPY | 9 | 75 |
| 10 | 4V66|1|AE | Structure of the E. coli ribosome and the tRNAs in Post-accommodation state | ELECTRON MICROSCOPY | 9 | 76 |
| 11 | 4V65|1|AE | Structure of the E. coli ribosome in the Pre-accommodation state | ELECTRON MICROSCOPY | 9 | 76 |
| 12 | 4V4T|1|AW | Crystal structure of the whole ribosomal complex with a stop codon in the A-site. | X-RAY DIFFRACTION | 6.46 | 73 |
| 13 | 4V4R|1|AW | Crystal structure of the whole ribosomal complex. | X-RAY DIFFRACTION | 5.9 | 73 |
| 14 | 4V4S|1|AW | Crystal structure of the whole ribosomal complex. | X-RAY DIFFRACTION | 6.76 | 73 |
| 15 | 4V4W|1|AV | Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143 | ELECTRON MICROSCOPY | 15 | 76 |
| 16 | 4V4W|1|AU | Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143 | ELECTRON MICROSCOPY | 15 | 76 |
| 17 | 4V4V|1|AU | Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056 | ELECTRON MICROSCOPY | 15 | 76 |
| 18 | 4V4V|1|AW | Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056 | ELECTRON MICROSCOPY | 15 | 76 |
| 19 | 4V4V|1|AV | Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056 | ELECTRON MICROSCOPY | 15 | 76 |
| 20 | 1ZO1|1|F | IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex | ELECTRON MICROSCOPY | 13.8 | 76 |
| 21 | 1ZO3|1|A | The P-site and P/E-site tRNA structures fitted to P/I site codon. | ELECTRON MICROSCOPY | 13.8 | 76 |
| 22 | 1ZO3|1|B | The P-site and P/E-site tRNA structures fitted to P/I site codon. | ELECTRON MICROSCOPY | 13.8 | 76 |
| 23 | 1MJ1|1|D | FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME | ELECTRON MICROSCOPY | 13 | 62 |
| 24 | 4V4W|1|AW | Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143 | ELECTRON MICROSCOPY | 15 | 76 |
| 25 | 4V49|1|AW | Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome. | X-RAY DIFFRACTION | 8.7 | 76 |
| 26 | 4V66|1|AA | Structure of the E. coli ribosome and the tRNAs in Post-accommodation state | ELECTRON MICROSCOPY | 9 | 75 |
| 27 | 3DEG|1|A | Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP | ELECTRON MICROSCOPY | 10.9 | 62 |
| 28 | 3EQ3|1|Y | Model of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EM | ELECTRON MICROSCOPY | 9 | 74 |
| 29 | 4V48|1|A6 | Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome | ELECTRON MICROSCOPY | 11.5 | 76 |
| 30 | 3EP2|1|Y | Model of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EM | ELECTRON MICROSCOPY | 9 | 74 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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