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Equivalence class NR_all_89171.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16RLP|1|R (rep)RNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
26RLP|1|ZRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
36RLP|1|aRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
46RLP|1|bRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
56RLP|1|cRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
66RLP|1|dRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
76RLP|1|eRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
86RLP|1|fRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
96RLP|1|gRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
106RLP|1|hRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
116RLP|1|iRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
126RLP|1|jRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
136RLP|1|kRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
146RLP|1|lRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
156RLP|1|mRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
166RLP|1|nRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
176RLP|1|oRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
186RLP|1|pRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
196RLP|1|qRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
206RLP|1|rRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
216RLP|1|sRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
226RLP|1|tRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
236RLP|1|uRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
246RLP|1|vRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virusCryo-EM reconstruction of TMV coat proteinElectron microscopy2.32022-11-23
252TMV|1|RRNA (5'-R(P*GP*AP*A)-3')VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTIONFiber diffraction2.91989-01-09
261CGM|1|IRNA (5'-R(P*GP*AP*A)-3')STRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSESFiber diffraction3.41994-04-30
277Q2R|1|BRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virus (vulgare)cryo iDPC-STEM structure recorded with CSA 4.0Electron microscopy3.52022-09-21
287Q2S|1|BRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virus (vulgare)cryo iDPC-STEM structure recorded with CSA 4.5Electron microscopy3.72022-09-21
297Q2Q|1|BRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virus (vulgare)cryo iDPC-STEM structure recorded with CSA 3.5Electron microscopy4.32022-09-21
307Q23|1|BRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virus (vulgare)cryo iDPC-STEM structure recorded with CSA 3.0Electron microscopy4.32022-09-21
318U3B|1|3RNA (5'-D(*(GTP))-R(P*AP*A)-3')Escherichia coliCryo-EM structure of E. coli NarL-transcription activation complex at 3.2AElectron microscopy3.232024-01-17
325A79|1|RRNATobacco mosaic virusNovel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EMElectron microscopy4.12015-09-02
335A7A|1|RRNATobacco mosaic virusNovel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EMElectron microscopy4.12015-09-02
342OM3|1|RTobacco Mosaic Virus RNAHigh-resolution cryo-EM structure of Tobacco Mosaic VirusElectron microscopy4.42007-10-16
357Q22|1|BRNA (5'-R(P*GP*AP*A)-3')Tobacco mosaic virus (vulgare)cryo iDPC-STEM structure recorded with CSA 2.0Electron microscopy6.32022-09-21
363PDM|1|RRNA (5'-R(P*GP*AP*A)-3')Hibiscus Latent Singapore virusFiber diffraction3.52011-01-12
372XEA|1|R5'-(*GP*AP*AP)-3'Tobacco mosaic virus4.6 ANGSTROM CRYO-EM RECONSTRUCTION OF TOBACCO MOSAIC VIRUS FROM IMAGES RECORDED AT 300 KEV ON A 4KX4K CCD CAMERAElectron microscopy4.62010-06-30

Release history

Release3.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.332
Date2024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16RLP|1|rCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
26RLP|1|qCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
36RLP|1|ZCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
46RLP|1|aCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
56RLP|1|sCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
66RLP|1|cCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
76RLP|1|tCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
86RLP|1|hCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
96RLP|1|pCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
106RLP|1|dCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
116RLP|1|fCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
126RLP|1|nCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
136RLP|1|mCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
146RLP|1|iCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
156RLP|1|bCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
166RLP|1|kCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
176RLP|1|uCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
186RLP|1|vCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
196RLP|1|jCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
206RLP|1|RCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
216RLP|1|lCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
226RLP|1|oCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
236RLP|1|gCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
246RLP|1|eCryo-EM reconstruction of TMV coat proteinELECTRON MICROSCOPY2.33
257Q2R|1|Bcryo iDPC-STEM structure recorded with CSA 4.0ELECTRON MICROSCOPY3.53
262OM3|1|RHigh-resolution cryo-EM structure of Tobacco Mosaic VirusELECTRON MICROSCOPY4.43
272XEA|1|R4.6 ANGSTROM CRYO-EM RECONSTRUCTION OF TOBACCO MOSAIC VIRUS FROM IMAGES RECORDED AT 300 KEV ON A 4KX4K CCD CAMERAELECTRON MICROSCOPY4.63
282TMV|1|RVISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTIONFIBER DIFFRACTION2.93
295A79|1|RNovel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EMELECTRON MICROSCOPY4.13
305A7A|1|RNovel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EMELECTRON MICROSCOPY4.13
311CGM|1|ISTRUCTURE DETERMINATION OF CUCUMBER GREEN MOTTLE MOSAIC VIRUS BY X-RAY FIBER DIFFRACTION. SIGNIFICANCE FOR THE EVOLUTION OF TOBAMOVIRUSESFIBER DIFFRACTION3.43
323PDM|1|RHibiscus Latent Singapore virusFIBER DIFFRACTION3.53
337Q2S|1|Bcryo iDPC-STEM structure recorded with CSA 4.5ELECTRON MICROSCOPY3.73
347Q23|1|Bcryo iDPC-STEM structure recorded with CSA 3.0ELECTRON MICROSCOPY4.33
358U3B|1|3Cryo-EM structure of E. coli NarL-transcription activation complex at 3.2AELECTRON MICROSCOPY3.232
367Q2Q|1|Bcryo iDPC-STEM structure recorded with CSA 3.5ELECTRON MICROSCOPY4.33
377Q22|1|Bcryo iDPC-STEM structure recorded with CSA 2.0ELECTRON MICROSCOPY6.33
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