RNA 3D Hub //

Equivalence class NR_all_89429.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12XNZ|1|A (rep)Purine riboswitchGuanine riboswitchBacillus subtilisBacteriaRF00167xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screeningX-ray diffraction1.592011-04-06
23FO4|1|AGuanine riboswitch C74U mutantCrystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanineX-ray diffraction1.92009-06-23
33GOG|1|AGuanine riboswitchGuanine riboswitch A21G,U75C mutant bound to 6-chloroguanineX-ray diffraction2.12009-06-23
42EEV|1|Aguanine riboswitchGuanine riboswitch U22C, A52G mutant bound to hypoxanthineX-ray diffraction1.952007-11-13
52G9C|1|Aguanine riboswitchModified pyrimidines Specifically bind the purine riboswitchX-ray diffraction1.72006-11-21
63FO6|1|AGuanine riboswitchCrystal structure of guanine riboswitch bound to 6-O-methylguanineX-ray diffraction1.92009-06-23
73GAO|1|AGuanine riboswitchCrystal structure of the guanine riboswitch bound to xanthine.X-ray diffraction1.92009-06-23
83GER|1|AGuanine riboswitchGuanine riboswitch bound to 6-chloroguanineX-ray diffraction1.72009-06-23
92EET|1|AGuanine RiboswitchGuanine Riboswitch A21G, U75C mutant bound to hypoxanthineX-ray diffraction1.952007-11-13
104FEN|1|BA24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domainCrystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-ray diffraction1.352013-02-27
114FEO|1|BU25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domainCrystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurineX-ray diffraction1.62013-02-27
124FE5|1|Bxpt-pbuX guanine riboswitch aptamer domainCrystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-ray diffraction1.322012-06-27
134FEP|1|BA24U/U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domainCrystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurineX-ray diffraction1.652013-02-27
142EEW|1|AGuanine riboswitchGuanine Riboswitch U47C mutant bound to hypoxanthineX-ray diffraction2.252007-11-13
152EES|1|AGuanine riboswitchGuanine riboswitch A21U, U75A mutant bound to hypoxanthineX-ray diffraction1.752007-11-13
162EEU|1|AGuanine riboswitchGuanine riboswitch U22A, A52U mutant bound to hypoxanthineX-ray diffraction1.952007-11-13
173GES|1|AGuanine riboswitchCrystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanineX-ray diffraction2.152009-06-23
183DS7|1|A67-MERStructure of an RNA-2'-deoxyguanosine complexX-ray diffraction1.852009-02-17
194FEJ|1|BA24U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domainCrystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-ray diffraction1.52013-02-27
203DS7|1|B67-MERStructure of an RNA-2'-deoxyguanosine complexX-ray diffraction1.852009-02-17
214FEL|1|BU25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domainCrystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-ray diffraction1.62013-02-27
222XO0|1|APurine riboswitchGUANINE RIBOSWITCHBacillus subtilisBacteriaRF00167xpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screeningX-ray diffraction1.72011-04-06
232XNW|1|APurine riboswitchGUANINE RIBOSWITCHBacillus subtilisBacteriaRF00167XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENINGX-ray diffraction1.52011-04-06
242XO1|1|APurine riboswitchGuanine riboswitchBacillus subtilisBacteriaRF00167xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenineX-ray diffraction1.62011-04-06
253GOT|1|AGuanine riboswitchGuanine riboswitch C74U mutant bound to 2-fluoroadenine.X-ray diffraction1.952009-06-23
263G4M|1|AGuanine riboswitchCrystal structure of guanine riboswitch bound to 2-aminopurineX-ray diffraction2.42009-06-23
272B57|1|A65-MERGuanine Riboswitch C74U mutant bound to 2,6-diaminopurineX-ray diffraction2.152006-05-23

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.35
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-07

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_89429.1NR_1.5_89429.22.36(4) 4FEN|1|B, 2XNW|1|A, 4FE5|1|B, 4FEJ|1|B(23) 2EES|1|A, 2EET|1|A, 2EEW|1|A, 2G9C|1|A, 2XO1|1|A, 3DS7|1|A, 3FO6|1|A, 3G4M|1|A, 3GES|1|A, 3GOG|1|A, 4FEO|1|B, 4FEP|1|B, 2EEU|1|A, 2XNZ|1|A, 3DS7|1|B, 3GAO|1|A, 3GOT|1|A, 2B57|1|A, 2EEV|1|A, 2XO0|1|A, 3FO4|1|A, 3GER|1|A, 4FEL|1|B(0)
NR_all_89429.1NR_2.0_89429.22.36(22) 2XO1|1|A, 3DS7|1|A, 3DS7|1|B, 3FO4|1|A, 3FO6|1|A, 3GAO|1|A, 3GER|1|A, 3GOT|1|A, 4FE5|1|B, 4FEJ|1|B, 4FEL|1|B, 4FEN|1|B, 4FEO|1|B, 4FEP|1|B, 2EES|1|A, 2EET|1|A, 2EEU|1|A, 2EEV|1|A, 2G9C|1|A, 2XNW|1|A, 2XNZ|1|A, 2XO0|1|A(5) 3GES|1|A, 3G4M|1|A, 2EEW|1|A, 2B57|1|A, 3GOG|1|A(0)
NR_all_89429.1NR_2.5_89429.22.36(27) 2EES|1|A, 2EEW|1|A, 2XO0|1|A, 3FO4|1|A, 3GER|1|A, 4FE5|1|B, 4FEO|1|B, 2B57|1|A, 2EEV|1|A, 2XNZ|1|A, 3DS7|1|B, 3GAO|1|A, 3GOT|1|A, 4FEN|1|B, 2EEU|1|A, 2XNW|1|A, 3DS7|1|A, 3G4M|1|A, 3GOG|1|A, 4FEL|1|B, 2EET|1|A, 2G9C|1|A, 2XO1|1|A, 3FO6|1|A, 3GES|1|A, 4FEJ|1|B, 4FEP|1|B(0) (0)
NR_all_89429.1NR_20.0_89429.22.36(27) 2EES|1|A, 2EEU|1|A, 2EEW|1|A, 2XNW|1|A, 2XO0|1|A, 3DS7|1|A, 3FO4|1|A, 3G4M|1|A, 3GER|1|A, 4FE5|1|B, 4FEL|1|B, 4FEO|1|B, 3GOG|1|A, 2B57|1|A, 2EET|1|A, 2EEV|1|A, 2G9C|1|A, 2XNZ|1|A, 2XO1|1|A, 3DS7|1|B, 3FO6|1|A, 3GAO|1|A, 4FEJ|1|B, 4FEN|1|B, 4FEP|1|B, 3GES|1|A, 3GOT|1|A(0) (2) 5C7U|1|B, 5C7W|1|C
NR_all_89429.1NR_3.0_89429.22.36(27) 2B57|1|A, 2EEV|1|A, 2XNZ|1|A, 3DS7|1|B, 3GAO|1|A, 3GOT|1|A, 4FEN|1|B, 2EEU|1|A, 2XNW|1|A, 3DS7|1|A, 3G4M|1|A, 3GOG|1|A, 4FEL|1|B, 2EET|1|A, 2G9C|1|A, 2XO1|1|A, 3FO6|1|A, 3GES|1|A, 4FEJ|1|B, 4FEP|1|B, 2EES|1|A, 2EEW|1|A, 2XO0|1|A, 3FO4|1|A, 3GER|1|A, 4FE5|1|B, 4FEO|1|B(0) (0)
NR_all_89429.1NR_3.5_89429.22.36(27) 3FO6|1|A, 3GAO|1|A, 3GES|1|A, 3GOT|1|A, 4FEJ|1|B, 4FEN|1|B, 4FEP|1|B, 2B57|1|A, 2EET|1|A, 2EEV|1|A, 2G9C|1|A, 2XNZ|1|A, 2XO1|1|A, 3DS7|1|B, 3G4M|1|A, 3GER|1|A, 3GOG|1|A, 4FE5|1|B, 4FEL|1|B, 4FEO|1|B, 2EES|1|A, 2EEU|1|A, 2EEW|1|A, 2XNW|1|A, 2XO0|1|A, 3DS7|1|A, 3FO4|1|A(0) (2) 5C7W|1|C, 5C7U|1|B
NR_all_89429.1NR_4.0_89429.22.36(27) 2EES|1|A, 2EEU|1|A, 2EEW|1|A, 2XNW|1|A, 2XO0|1|A, 3DS7|1|A, 3FO4|1|A, 3G4M|1|A, 4FE5|1|B, 4FEL|1|B, 4FEO|1|B, 3GER|1|A, 3GOG|1|A, 2B57|1|A, 2EET|1|A, 2EEV|1|A, 2G9C|1|A, 2XNZ|1|A, 2XO1|1|A, 3DS7|1|B, 3FO6|1|A, 3GAO|1|A, 4FEJ|1|B, 4FEN|1|B, 4FEP|1|B, 3GES|1|A, 3GOT|1|A(0) (2) 5C7W|1|C, 5C7U|1|B
NR_all_89429.1NR_all_89429.22.36(27) 2B57|1|A, 2EET|1|A, 2EEV|1|A, 2G9C|1|A, 2XNZ|1|A, 2XO1|1|A, 3DS7|1|B, 3FO6|1|A, 3GAO|1|A, 3GES|1|A, 3GOT|1|A, 4FEJ|1|B, 4FEN|1|B, 4FEP|1|B, 2EES|1|A, 2EEU|1|A, 2EEW|1|A, 2XNW|1|A, 2XO0|1|A, 3DS7|1|A, 3FO4|1|A, 3G4M|1|A, 3GER|1|A, 3GOG|1|A, 4FE5|1|B, 4FEL|1|B, 4FEO|1|B(0) (2) 5C7W|1|C, 5C7U|1|B

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14FEO|1|BCrystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurineX-RAY DIFFRACTION1.667
24FEN|1|BCrystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-RAY DIFFRACTION1.3567
34FEP|1|BCrystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurineX-RAY DIFFRACTION1.6567
44FEL|1|BCrystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-RAY DIFFRACTION1.667
53G4M|1|ACrystal structure of guanine riboswitch bound to 2-aminopurineX-RAY DIFFRACTION2.467
62B57|1|AGuanine Riboswitch C74U mutant bound to 2,6-diaminopurineX-RAY DIFFRACTION2.1565
73GOT|1|AGuanine riboswitch C74U mutant bound to 2-fluoroadenine.X-RAY DIFFRACTION1.9567
82EES|1|AGuanine riboswitch A21U, U75A mutant bound to hypoxanthineX-RAY DIFFRACTION1.7567
92XNZ|1|Axpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screeningX-RAY DIFFRACTION1.5965
102G9C|1|AModified pyrimidines Specifically bind the purine riboswitchX-RAY DIFFRACTION1.767
113GER|1|AGuanine riboswitch bound to 6-chloroguanineX-RAY DIFFRACTION1.767
123FO4|1|ACrystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanineX-RAY DIFFRACTION1.963
134FE5|1|BCrystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-RAY DIFFRACTION1.3267
142XO1|1|Axpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenineX-RAY DIFFRACTION1.665
152EET|1|AGuanine Riboswitch A21G, U75C mutant bound to hypoxanthineX-RAY DIFFRACTION1.9567
163GOG|1|AGuanine riboswitch A21G,U75C mutant bound to 6-chloroguanineX-RAY DIFFRACTION2.165
173FO6|1|ACrystal structure of guanine riboswitch bound to 6-O-methylguanineX-RAY DIFFRACTION1.967
184FEJ|1|BCrystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthineX-RAY DIFFRACTION1.567
192EEW|1|AGuanine Riboswitch U47C mutant bound to hypoxanthineX-RAY DIFFRACTION2.2567
202EEU|1|AGuanine riboswitch U22A, A52U mutant bound to hypoxanthineX-RAY DIFFRACTION1.9567
212XNW|1|AXPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENINGX-RAY DIFFRACTION1.565
223GAO|1|ACrystal structure of the guanine riboswitch bound to xanthine.X-RAY DIFFRACTION1.967
232XO0|1|Axpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screeningX-RAY DIFFRACTION1.765
243GES|1|ACrystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanineX-RAY DIFFRACTION2.1567
252EEV|1|AGuanine riboswitch U22C, A52G mutant bound to hypoxanthineX-RAY DIFFRACTION1.9567
263DS7|1|AStructure of an RNA-2'-deoxyguanosine complexX-RAY DIFFRACTION1.8567
273DS7|1|BStructure of an RNA-2'-deoxyguanosine complexX-RAY DIFFRACTION1.8567
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