RNA 3D Hub //

Equivalence class NR_all_94066.9 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18BUU|1|a (rep)Small subunit ribosomal RNA16S rRNA, mRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177ARE-ABCF VmlR2 bound to a 70S ribosomeElectron microscopy2.92023-04-05
26HA1|1|aSmall subunit ribosomal RNA16S ribosomal RNABacillus subtilisBacteriaRF00177Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinElectron microscopy3.12018-08-29
37O5B|1|ASmall subunit ribosomal RNA16S rRNA (1533-MER)Bacillus subtilis subsp. subtilis str. 168BacteriaRF00177Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP boundElectron microscopy3.332022-02-02
48QPP|1|ASmall subunit ribosomal RNA16S rRNA (1533-MER)Bacillus subtilisBacteriaRF00177Bacillus subtilis MutS2-collided disome complex (stalled 70S)Electron microscopy3.42023-12-27
57QV2|1|aSmall subunit ribosomal RNA16S ribosomal RNA, mRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177Bacillus subtilis collided disome (Collided 70S)Electron microscopy3.52022-03-09
66HA8|1|aSmall subunit ribosomal RNA16S rRNABacillus subtilisBacteriaRF00177Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeElectron microscopy3.52018-08-29
77QV1|1|aSmall subunit ribosomal RNA16S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177Bacillus subtilis collided disome (Leading 70S)Electron microscopy3.52022-03-09
88R55|1|ASmall subunit ribosomal RNA16S rRNA (1533-MER)Bacillus subtilisBacteriaRF00177Bacillus subtilis MutS2-collided disome complex (stalled 70S)Electron microscopy3.572024-01-17
98CDU|1|ASmall subunit ribosomal RNA16S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177Rnase R bound to a 30S degradation intermediate (main state)Electron microscopy3.12023-12-20
105NJT|1|ASmall subunit ribosomal RNA16S ribosomal RNABacillus subtilisBacteriaRF00177Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.Electron microscopy3.82017-06-14
113J9W|1|AASmall subunit ribosomal RNA16S ribosomal RNA, mRNABacillus subtilisBacteriaRF00177Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexElectron microscopy3.92015-04-29
128CEC|1|ASmall subunit ribosomal RNA16S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177Rnase R bound to a 30S degradation intermediate (State I - head-turning)Electron microscopy3.572023-12-20
138CEE|1|ASmall subunit ribosomal RNA16S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177Rnase R bound to a 30S degradation intermediate (State I - head-turning)Electron microscopy3.72023-12-20
146HTQ|1|aSmall subunit ribosomal RNA16S rRNABacillus subtilisBacteriaRF00177Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosomeElectron microscopy4.52019-10-23
157QGU|1|WSmall subunit ribosomal RNA16S rRNABacillus subtilisBacteriaRF00177Structure of the B. subtilis disome - stalled 70S ribosomeElectron microscopy4.752022-03-16
168CED|1|ASmall subunit ribosomal RNA16S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177Rnase R bound to a 30S degradation intermediate (State I - head-turning)Electron microscopy4.152023-12-20
177QV3|1|aSmall subunit ribosomal RNA16S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00177Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)Electron microscopy5.142022-03-09
187QH4|1|WSmall subunit ribosomal RNA16S rRNABacillus subtilisBacteriaRF00177Structure of the B. subtilis disome - collided 70S ribosomeElectron microscopy5.452022-03-16

Release history

Release3.3183.3193.3203.3213.3223.3233.3243.3253.326
Date2024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
18BUU|1|aARE-ABCF VmlR2 bound to a 70S ribosomeELECTRON MICROSCOPY2.91538
28R55|1|ABacillus subtilis MutS2-collided disome complex (stalled 70S)ELECTRON MICROSCOPY3.571533
38QPP|1|ABacillus subtilis MutS2-collided disome complex (stalled 70S)ELECTRON MICROSCOPY3.41533
47O5B|1|ACryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP boundELECTRON MICROSCOPY3.331533
57QV3|1|aBacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)ELECTRON MICROSCOPY5.141533
67QV1|1|aBacillus subtilis collided disome (Leading 70S)ELECTRON MICROSCOPY3.51533
77QV2|1|aBacillus subtilis collided disome (Collided 70S)ELECTRON MICROSCOPY3.51545
86HA8|1|aCryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.51533
96HA1|1|aCryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.11533
106HTQ|1|aStringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosomeELECTRON MICROSCOPY4.51533
117QGU|1|WStructure of the B. subtilis disome - stalled 70S ribosomeELECTRON MICROSCOPY4.751544
123J9W|1|AACryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexELECTRON MICROSCOPY3.91544
137QH4|1|WStructure of the B. subtilis disome - collided 70S ribosomeELECTRON MICROSCOPY5.451544
145NJT|1|AStructure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.ELECTRON MICROSCOPY3.81544
158CED|1|ARnase R bound to a 30S degradation intermediate (State I - head-turning)ELECTRON MICROSCOPY4.151333
168CEC|1|ARnase R bound to a 30S degradation intermediate (State I - head-turning)ELECTRON MICROSCOPY3.571333
178CDU|1|ARnase R bound to a 30S degradation intermediate (main state)ELECTRON MICROSCOPY3.11333
188CEE|1|ARnase R bound to a 30S degradation intermediate (State I - head-turning)ELECTRON MICROSCOPY3.71333
Copyright 2024 BGSU RNA group. Page generated in 0.0662 s