2KDQ Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2KDQ_001 | 1/B/29:36 | No text annotation Not in a motif group | ||
| HL_2KDQ_002 | 2/B/29:36 | No text annotation Not in a motif group | ||
| HL_2KDQ_003 | 3/B/29:36 | No text annotation Not in a motif group | ||
| HL_2KDQ_004 | 4/B/29:36 | No text annotation Not in a motif group | ||
| HL_2KDQ_005 | 5/B/29:36 | No text annotation Not in a motif group | ||
| HL_2KDQ_006 | 6/B/29:36 | No text annotation Not in a motif group | ||
| HL_2KDQ_007 | 7/B/29:36 | No text annotation Not in a motif group | geometric HL_5TBW_022 HL_94803.1 | |
| HL_2KDQ_008 | 8/B/29:36 | No text annotation Not in a motif group | ||
| HL_2KDQ_009 | 9/B/29:36 | No text annotation Not in a motif group | ||
| HL_2KDQ_010 | 10/B/29:36 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2KDQ_001 | 1/B/22:26, 1/B/39:40 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_2KDQ_002 | 2/B/22:26, 2/B/39:40 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_2KDQ_003 | 3/B/22:26, 3/B/39:40 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_2KDQ_005 | 4/B/22:26, 4/B/39:40 | Basepair outside cWW Not in a motif group | geometric IL_5LYS_007 IL_16396.2 | |
| IL_2KDQ_007 | 5/B/22:26, 5/B/39:40 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_2KDQ_008 | 6/B/22:26, 6/B/39:40 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_2KDQ_009 | 7/B/22:26, 7/B/39:40 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_2KDQ_010 | 8/B/22:26, 8/B/39:40 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_2KDQ_011 | 9/B/22:26, 9/B/39:40 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_2KDQ_012 | 10/B/22:26, 10/B/39:40 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2KDQ_004 | No text annotation | ||
| IL_2KDQ_006 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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