4V8Z Summary
- Structure title
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Authors
- Release date
- 2014-07-09
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
- Chains
- 6 RNA chains from Saccharomyces cerevisiae
- 79 other chains
- Nucleic acid compounds
- Other compounds
- 18S RIBOSOMAL RNA, 25S RIBOSOMAL RNA, 5S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA, EUKARYOTIC RIBOSOMAL PI TRNA, 5'-R(*AP*UP*GP)-3'
- 40S RIBOSOMAL PROTEIN S26-A, 40S RIBOSOMAL PROTEIN S27-A, 40S RIBOSOMAL PROTEIN S28-A, 40S RIBOSOMAL PROTEIN S29-A, 40S RIBOSOMAL PROTEIN S30-A, UBIQUITIN-40S RIBOSOMAL PROTEIN S31, GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN, SUPPRESSOR PROTEIN STM1, 40S RIBOSOMAL PROTEIN S0-A, 40S RIBOSOMAL PROTEIN S1-A, 40S RIBOSOMAL PROTEIN S2, 40S RIBOSOMAL PROTEIN S3, 40S RIBOSOMAL PROTEIN S4-A, 40S RIBOSOMAL PROTEIN S5, 40S RIBOSOMAL PROTEIN S6-A, 40S RIBOSOMAL PROTEIN S7-A, 40S RIBOSOMAL PROTEIN S8-A, 40S RIBOSOMAL PROTEIN S9-A, 40S RIBOSOMAL PROTEIN S10-A, 40S RIBOSOMAL PROTEIN S11-A, 40S RIBOSOMAL PROTEIN S12, 40S RIBOSOMAL PROTEIN S13, 40S RIBOSOMAL PROTEIN S14-A, 40S RIBOSOMAL PROTEIN S15, 40S RIBOSOMAL PROTEIN S16-A, 40S RIBOSOMAL PROTEIN S17-A, 40S RIBOSOMAL PROTEIN S18-A, 40S RIBOSOMAL PROTEIN S19-A, 40S RIBOSOMAL PROTEIN S20, 40S RIBOSOMAL PROTEIN S21-A, 40S RIBOSOMAL PROTEIN S22-A, 40S RIBOSOMAL PROTEIN S23-A, 40S RIBOSOMAL PROTEIN S24-A, 40S RIBOSOMAL PROTEIN S25-A, 60S RIBOSOMAL PROTEIN L2-B, 60S RIBOSOMAL PROTEIN L3, 60S RIBOSOMAL PROTEIN L4-A, 60S RIBOSOMAL PROTEIN L5, 60S RIBOSOMAL PROTEIN L6-A, 60S RIBOSOMAL PROTEIN L7-A, 60S RIBOSOMAL PROTEIN L8-A, 60S RIBOSOMAL PROTEIN L9-A, 60S RIBOSOMAL PROTEIN L10, 60S RIBOSOMAL PROTEIN L11-A, 60S RIBOSOMAL PROTEIN L11-A, 60S RIBOSOMAL PROTEIN L13-A, 60S RIBOSOMAL PROTEIN L14-B, 60S RIBOSOMAL PROTEIN L15-A, 60S RIBOSOMAL PROTEIN L16-A, 60S RIBOSOMAL PROTEIN L17-A, 60S RIBOSOMAL PROTEIN L18-A, 60S RIBOSOMAL PROTEIN L19-B, 60S RIBOSOMAL PROTEIN L20-B, 60S RIBOSOMAL PROTEIN L21-A, 60S RIBOSOMAL PROTEIN L22-A, 60S RIBOSOMAL PROTEIN L23-A, 60S RIBOSOMAL PROTEIN L24-A, 60S RIBOSOMAL PROTEIN L25, 60S RIBOSOMAL PROTEIN L26-A, 60S RIBOSOMAL PROTEIN L27-A, 60S RIBOSOMAL PROTEIN L28, 60S RIBOSOMAL PROTEIN L29, 60S RIBOSOMAL PROTEIN L30, 60S RIBOSOMAL PROTEIN L31-A, 60S RIBOSOMAL PROTEIN L32, 60S RIBOSOMAL PROTEIN L33-A, 60S RIBOSOMAL PROTEIN L34-A, 60S RIBOSOMAL PROTEIN L35-B, 60S RIBOSOMAL PROTEIN L36-A, 60S RIBOSOMAL PROTEIN L37-A, 60S RIBOSOMAL PROTEIN L38, 60S RIBOSOMAL PROTEIN L39, UBIQUITIN-60S RIBOSOMAL PROTEIN L40, 60S RIBOSOMAL PROTEIN L41-B, 60S RIBOSOMAL PROTEIN L42-A, 60S ACIDIC RIBOSOMAL PROTEIN P0, 60S ACIDIC RIBOSOMAL PROTEIN P1, 60S ACIDIC RIBOSOMAL PROTEIN P2, EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2
Pairwise Interactions
Interactions annotated by FR3D:- 1,997 base-pairs
- 5,286 base-stacking
- 117 base-phosphate
- 140 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 4V8Z contains:- 127 hairpin loops from 0 motif groups
- 263 internal loops from 0 motif groups
- 69 junction loops from 0 motif groups
3D Redundancy
4V8Z has chains which belong to the following equivalence classes in the current representative set:- NR_all_38961.6 (1)
- NR_all_03510.67 (1)
- NR_all_90506.78 (1)
- NR_all_18586.73 (1)
- NR_all_27835.1 (1) rep
- NR_20.0_38961.6 (1)
- NR_20.0_03510.67 (1)
- NR_20.0_90506.78 (1)
- NR_20.0_18586.73 (1)
- NR_20.0_27835.1 (1) rep
Similar structures
8P9A 8P9A 5TBW 4V88 8PNN 4V88 5TBW 8P4V 8PNN 8P4V 7OSA 6HHQ 5OBM 5I4L 5MEI 5NDW 5LYB 5I4L 5OBM 5MEI 7OSM 5ON6 6HHQ 5NDW 5LYB 5ON6 5NDV 5NDV 5FCJ 5NDG 5NDG 5FCJ 5TGM 5TGM 4V7R 4V7R 5DAT 5TGA 5DGE 5DGV 5DGF 5DC3 5DAT 5TGA 5DGV 5DGE 5FCI 5DGF 5DC3 5FCI 8T2Y 8CCS 8EVP 8CDR 8CEH 7ZW0 8T2Z 8EWC 8T2X 8BN3 8EUB 7ZUX 8ZHC 8CGN 7MPJ 8EVQ 6LQP 6T4Q 8CIV 8ZHB 8EWB 8T30 6WOO 4U4R 8T3A 8CG8 8ZH3 9F9S 6TB3 6SNT 9F9S 6KE6 4U3U 8T3D 8ZGR 4U4R 8K82 7A1G 6ZVI 7N8B 7MPI 8CF5 8CDL 8CAH 8T3E 4U3U 8ZGY 8T3B 4U3M 8T3F 4U4Q 4U4U 4U52 8Z70 4U3M 8UT0 7RR5 4U6F 8C01 4U4N 4U52 4U4U 4U4Q 6Q8Y 4U6F 4U4Z 7B7D 8CAS 4U4Y 4U3N 6XIR 6SV4 6SV4 8K2D 4U55 6T7T 4U4Z 5M1J 4U4N 8EVT 4U50 6T7I 4U51 8XU8 4U3N 8CKU 7ZPQ 8UTI 4U4Y 4U51 6S47 4U55 6TNU 6LQU 6FAI 5JUP 6Z6K 6Z6J 4U53 4U50 6RBD 8Y0U 8Z71 6ZQC 4U53 6SV4 8C00 4U56 8BQX 8EVS 6ZQB 4U56 8T3C 6LQQ 7NRC 8BQD 8YLD 8YLR 7SUK 5MC6 6T83 6T83 5JUO 5JUT 8EVR 6RBE 5JUU 6EML 5WLC 8CMJ 6GQB 6Y7C 7D4I 6LQS 5JUS 8C83 6GQV 6ZQD 6XIQ 7AJU 7ZUW 7NRD 4U4O 7WTR 4U4O 4V8Y 6ZQG 6GQ1 7WTN 7AJT 7WTL 7WTO 7ZRS 7WTP 7WTQ 5WYK 5LL6 7WTM 7D5S 6I7O 6LQT 6I7O 6ZCE 6LQV 3J6Y 3J6X 3J77 3J78 6ZU9 6ZQF 7D5T 6ZQE 5TZS 6LQR 5WYJ 4V6I 7D63Structures from NR_all_03510.67