5JUO Summary
- Structure Title
- 5JUO Summary
- Authors
- Release Date
- 2016-10-05
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 4.0 Å
- Chains
-
- 5 RNA chains from Saccharomyces cerevisiae, Taura syndrome virus
- 78 other chains
- Compounds
- 18S ribosomal RNA, uL14 (yeast L23), uS3 (yeast S3), uS14 (yeast S29), 25S ribosomal RNA, eL24 (yeast L24), eS4 (yeast S4), eS30 (yeast S30), 5.8S ribosomal RNA, uL23 (yeast L25), uS7 (yeast S5), eS31 (yeast S31), 5S ribosomal RNA, uL24 (yeast L26), eS6 (yeast S6), yeast eEF2, uL1 (yeast L1), eL27 (yeast L27), eS7 (yeast S7), IRES, uL2 (yeast L2), uL15 (yeast L28), eS8 (yeast S8), uL3 (yeast L3), eL29 (yeast L29), uS4 (yeast S9), uL4 (yeast L4), eL30 (yeast L30), eS10 (yeast S10), uL18 (yeast L5), eL31 (yeast L31), uS17 (yeast S11), eL6 (yeast L6), eL32 (yeast L32), eS12 (yeast S12), uL30 (yeast L7), eL33 (yeast L33), uS15 (yeast S13), eL8 (yeast L8), eL34 (yeast L34), uS11 (yeast S14), uL6 (yeast L9), uL29 (yeast L35), uS19 (yeast S15), uL16 (yeast L10), eL36 (yeast L36), uS9 (yeast S16), uL5 (yeast L11), eL37 (yeast L37), eS17 (yeast S17), uL11 (yeast L12), eL38 (yeast L38), uS13 (yeast S18), eL13 (yeast L13), eL39 (yeast L39), eS19 (yeast S19), eL14 (yeast L14), eL40 (yeast L40), uS10 (yeast S20), eL15 (yeast L15), eL41 (yeast L41), eS21 (yeast S21), uL13 (yeast L16), eL42 (yeast L42), uS8 (yeast S22), uL22 (yeast L17), eL43 (yeast L43), uS12 (yeast S23), eL18 (yeast L18), uL10 (yeast P0), eS24 (yeast S24), eL19 (yeast L19), RACK1 (yeast Asc1), eS25 (yeast S25), eL20 (yeast L20), uS2 (yeast S0), eS26 (yeast S26), eL21 (yeast L21), eS1 (yeast S1), eS27 (yeast S27), eL22 (yeast L22), uS5 (yeast S2), eS28 (yeast S28)
Pairwise Interactions
Interactions annotated by FR3D:- 1,762 base-pairs
- 4,924 base-stacking
- 1,912 base-phosphate
- 270 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 5JUO contains:- 224 internal loops from 0 motif groups
- 119 hairpin loops from 0 motif groups
- 29 three-way junctions
3D Redundancy
5JUO has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_90506.47 (1)
- NR_20.0_03510.42 (1)
- NR_20.0_99969.1 (1)
- NR_20.0_18586.44 (1)
- NR_4.0_90506.47 (1)
- NR_4.0_03510.42 (1)
- NR_4.0_99969.1 (1)
- NR_4.0_18586.44 (1)
- NR_all_90506.47 (1)
- NR_all_03510.42 (1)
- NR_all_99969.1 (1)
- NR_all_18586.44 (1)
Similar structures
4V88 4U4Y 4U51 6TNU 4U55 6S47 6FAI 4U53 5JUP 4U50 6Z6K 6Z6J 6RBD 4U53 6SV4 4U3N 6T7I 4U6F 7B7D 4U4Y 4U3N 6SV4 6SV4 4U55 6XIR 6T7T 5M1J 4U4Z 4U4N 4U50 4U51 4U56 4U56 4U4O 4V8Y 6GQ1 5LL6 6I7O 6I7O 6ZCE 3J6Y 3J6X 3J77 3J78 6ZU9 4V8Z 4U4O 7NRD 6XIQ 7NRC 5MC6 6T83 6T83 5JUT 5JUU 6RBE 6EML 6GQB 6Y7C 5JUS 6GQV 4V6I 5TBW 5LYB 5ON6 5NDV 5NDV 5NDG 5NDG 5TGM 5TGM 4V7R 4V7R 5DAT 5TGA 5DGE 5NDW 6HHQ 5ON6 4V88 5TBW 7OSA 6HHQ 5OBM 5I4L 5MEI 5NDW 5LYB 5I4L 5MEI 5OBM 7OSM 5DGV 5DGF 4U3U 4U3M 4U4Q 4U4U 4U52 4U3M 4U6F 7RR5 4U4N 4U52 4U4U 4U4Q 6Q8Y 6ZVI 7A1G 4U4R 5DC3 5DAT 5TGA 5DGV 5DGE 5DGF 5DC3 6T4Q 4U4R 6WOO 6TB3 6SNT 4U3U 4U4ZStructures from NR_all_03510.42