8AGT Summary
- Structure Title
- 8AGT Summary
- Authors
- Tesina, P., Buschauer, R., Beckmann, R.
- Release Date
- 2023-03-08
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
- Chains
-
- 5 RNA chains from Saccharomyces cerevisiae
- 49 other chains
- Compounds
- 60S acidic ribosomal protein P0, CAT tailed nascent peptide, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L22-A, 60S ribosomal protein L23-A, 60S ribosomal protein L24-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, 60S ribosomal protein L28, 60S ribosomal protein L29, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L33-A, 60S ribosomal protein L34-A, 60S ribosomal protein L35-A, 60S ribosomal protein L36-A, 60S ribosomal protein L37-A, 60S ribosomal protein L38, 60S ribosomal protein L39, Ubiquitin-60S ribosomal protein L40, Ribosome quality control complex subunit 2, 60S ribosomal protein L42-A, 60S ribosomal protein L43-A, 60S ribosomal protein L41-A, E3 ubiquitin-protein ligase listerin, 25S rRNA, Eukaryotic translation initiation factor 6, 5S rRNA, 5.8S rRNA, 60S ribosomal protein L2-A, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L5, 60S ribosomal protein L6-B, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, 60S ribosomal protein L10, 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, Eukaryotic translation initiation factor 5A-1, 60S ribosomal protein L1-A, A-site Ala aminoacyl-tRNA, P-site petidyl-tRNA, 60S ribosomal protein L12-A
Pairwise Interactions
Interactions annotated by FR3D:- 1,524 base-pairs
- 3,749 base-stacking
- 1,550 base-phosphate
- 191 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 8AGT contains:- 150 internal loops from 0 motif groups
- 83 hairpin loops from 0 motif groups
- 17 three-way junctions
3D Redundancy
8AGT has chains which belong to the following equivalence classes in the current representative set:- NR_20.0_18586.59 (1)
- NR_20.0_90506.63 (1)
- NR_20.0_53745.1 (2)
- NR_3.0_18586.59 (1)
- NR_3.0_90506.63 (1)
- NR_3.0_53745.1 (2)
- NR_3.5_18586.59 (1)
- NR_3.5_90506.63 (1)
- NR_3.5_53745.1 (2)
- NR_4.0_18586.59 (1)
- NR_4.0_90506.63 (1)
- NR_4.0_53745.1 (2)
- NR_all_18586.59 (1)
- NR_all_90506.63 (1)
- NR_all_53745.1 (2)
Similar structures
5TBW 6R84 6SV4 6SV4 6SV4 7OH3 4U53 7NAC 6N8O 6N8M 4U53 6QT0 6HD7 7R7A 7Z34 8CMJ 8BQD 4U56 4U56 6OIG 6N8J 6QTZ 8BQX 8BJQ 5APO 6N8K 6N8L 5JUP 7OF1 7ZPQ 4U55 4U3N 3JCT 4U4Y 4U3N 7BTB 7BT6 6T7I 6RZZ 4U4Z 4U4N 4U4Y 6S47 4U51 6RI5 6R86 6Z6J 6Z6K 4U50 6M62 5H4P 6R87 4U50 4U55 4U51 4U4Z 5JCS 6C0F 6I7O 6I7O 7OHR 7OHP 7OHW 7OHY 7OHU 6EM3 6EM5 6EM1 6EM4 7OHS 3J6Y 4V6I 4V7F 4V8T 4V8Z 5Z3G 6CB1 8E5T 7OHT 3J78 3J77 3J6X 7OHV 7OHX 7ZRS 6FT6 6GQV 6S05 6T83 5JUO 5JUT 6T83 5JUU 6GQB 5MC6 7NRC 5JUS 6ELZ 6XIQ 5GAK 6YLX 6GQ1 4V8Y 7NRD 4U4O 4U4O 7ZUW 6YLY 5T6R 5APN 6N8N 6TNU 8AGZ 8CCS 5DC3 5DC3 5DGE 5DGF 5TGA 5DGF 5TGA 5DGE 5DGV 5DAT 8CDR 8CEH 8EVT 8HFR 8EUB 7ZUX 8CIV 8EWC 8AAF 8EVP 7TOP 8AGX 7ZW0 8CGN 5DGV 5DAT 4V7R 5OBM 5OBM 6HHQ 6HHQ 5MEI 5MEI 5I4L 5I4L 7OSA 4V88 4V88 5LYB 5NDV 5ON6 4V7R 5TGM 5TGM 5NDG 5NDG 5NDW 5NDW 5NDV 7OSM 5ON6 5LYB 5TBW 4U4N 4U4U 4U4Q 4U4U 4U3M 8CKU 4U4Q 6YLG 4U3M 5T62 7ZS5 7MPI 4U52 4U52 7RR5 5M1J 6XIR 7B7D 6QIK 4U6F 6T7T 4U6F 6YLH 7OHQ 6Q8Y 7U0H 7N8B 4U3U 4U3U 7TOO 7UQZ 6T4Q 7UQB 8AGU 8EVS 7V08 8CG8 7UOO 8AGW 8AGV 8CF5 8EVQ 8CDL 7UG6 8BIP 4U4R 4U4R 7AZY 8EWB 8EVR 6SNT 6TB3 6WOO 7MPJStructures from NR_all_90506.63